| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,527,656 | Δ5 bp | coding (1190‑1194/2136 nt) | yrfF → | putative RcsCDB‑response attenuator, inner membrane protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3527656 | 3527660 | 5 | 27 [0] | [0] 27 | yrfF | putative RcsCDB‑response attenuator, inner membrane protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3527655 | 0 (0.000) | 27 (0.600) | 23/284 | 1.1 | 100% | coding (1189/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein |
| ? | NC_000913 | 3527661 = | 0 (0.000) | coding (1195/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein | |||||
ATGCTGTTATTCTGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACCAGAATC > NC_000913/3527523‑3527788 | aTGCTGTTATTCTGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGGAGGCGATACATTGCagcggtacgg > 1:540663‑M1/1‑133 (MQ=255) tGTTATTCTGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGTAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAAATGGCTGACGCTAGCGTGCGGATAGGCGATACATTGCagcagtacgggaat > 1:621881‑M1/1‑129 (MQ=255) ttttcgatcccGATGGATCTCATCCTGAAATTCCCTCTCTCATGCATGAAAGGCGCGCAGACCATTGAACCCACCAGCGTAAAACAACTGCCTGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgta < 1:39885‑M1/138‑20 (MQ=255) tCTGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaa < 2:366379‑M1/143‑21 (MQ=255) cggaTCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaata < 1:247293‑M1/142‑23 (MQ=255) cTGGATATGCCGCTGAAATTCACTCTCTCATGGGTGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGGTACATTGCagcggtacgggaatgtggaatattcgaagtg > 2:31976‑M1/1‑112 (MQ=255) aTTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGACACATCGCagcggtgcgggaaggtgtaatattccgacttccgggacctggggggcg > 2:396494‑M1/1‑95 (MQ=255) tGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcac < 1:611258‑M1/143‑62 (MQ=255) ggATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcacc < 1:341578‑M1/143‑63 (MQ=255) gAAAGGCGCGTAGATCTTTGAAGTTATCAGAGTTAAACAACTGGCTGACGTGGGCGTGTGGGTAGGCGATACATTGCagcggtaagggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcacctttt < 2:405608‑M1/143‑67 (MQ=255) gAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccgattcacctttt > 1:15808‑M1/1‑77 (MQ=255) gAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcacctttt > 1:461636‑M1/1‑77 (MQ=255) gcgcgcAGACCATTGAAGGCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcaccttttttacc < 2:508764‑M1/143‑72 (MQ=255) cgcgcAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcaccttttttaccg < 1:61305‑M1/143‑73 (MQ=255) gcAGACCAGTGAAGCCACCAGCGTAAAACACCTGGCGGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcaccttttttaccgttt < 2:461636‑M1/143‑76 (MQ=255) aGACCAGTGAAGCCCCCAGCGTAAGACAACGGGCGGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcaccttttttaccgtttga < 2:668557‑M1/143‑78 (MQ=255) gCCCCCAGCGTACAACAACTGGCTGCCGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcaccttttttaccgtttgactgctcgcaga < 2:597503‑M1/143‑89 (MQ=255) tgccggcgtaaACCAACTGGCTGACGCGGGCGTGCGGGTAGGCGATACGTTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaacaccaattcaccttttttaccgtttgactgctcgcagatc < 2:33250‑M1/138‑91 (MQ=255) cagcagcgTAACATAACGGGCTGCCGCTGGCGTGCGGGTAGGCGATACCTTGCagtggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaacaccaattcaccttttttaccgtttgactgctcgcagatc < 2:275380‑M1/140‑91 (MQ=255) cGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcaccttttttaccgtttgacttctctccggtcctccgg > 1:414802‑M1/1‑47 (MQ=255) gTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaatccaccttttttaccgtttgactgctcgcagatcatctgga > 2:267919‑M1/1‑46 (MQ=255) tAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCagcggtacgggaatgtgtaatgttcgaacttccggaacctggagcgcgaaaaccaattcaccttttttaccgtttgactgctcgccgataatcaggaa > 2:232177‑M1/1‑45 (MQ=255) gCTGGCGTGCGGGTAGGCGATACACTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcaccttttttaccgtttgactgctcgcagatcatctggaacgacgcccgctcattgc < 1:268506‑M1/143‑116 (MQ=255) gggTAGGCGCTACATTGCagcggtacgggtatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcaccttttttaccggttgactgctcgcagatcatctggaacgacgcccgctcattgccattaccaga < 2:606611‑M1/143‑126 (MQ=255) tAGGCGATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcaccttttttaccgtttgactgctcgcagaccatctggaacgacgcccgctcattgccattcccagaatc > 2:373381‑M1/1‑15 (MQ=255) gATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcaccttttttaccgtttgactgctcgcagatcatctggaacgacgcccgctctttgcgtttgccagaatctacac > 1:322812‑M1/1‑10 (MQ=255) gATACATTGCagcggtacgggaatgtgtaatattcgaacttccggaacctggagcgcgaaaaccaattcaccttttttaccgtttgactgctcgcagatcatctggaacgacgcccgctcattgccattaccagaatctgaac > 1:414337‑M1/1‑10 (MQ=255) | ATGCTGTTATTCTGGATCCCGCTGGATATGCCGCTGAAATTCACTCTCTCATGGATGAAAGGCGCGCAGACCATTGAAGCCACCAGCGTAAAACAACTGGCTGACGCTGGCGTGCGGGTAGGCGATACATTGCGTATTAGCGGTACGGGAATGTGTAATATTCGAACTTCCGGAACCTGGAGCGCGAAAACCAATTCACCTTTTTTACCGTTTGACTGCTCGCAGATCATCTGGAACGACGCCCGCTCATTGCCATTACCAGAATC > NC_000913/3527523‑3527788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |