| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908–258674 | 258683 | 10–776 | 51 [0] | [0] 52 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 48 (1.020) | 42/266 | 0.1 | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
ACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/257759‑257907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTT > NC_000913/258684‑258822 ACGCTTGTGTTAAAAATGTGCTAAATTGTGCCAAGGTGGTAAAACAGTTGCATCACAACAGGAGATAGCAAGGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTG < 1:553579/143‑1 aggTTGTGTTCATAATCTGCTAAATGTTGCCAATTTGTGAAAACAGCTGCATAACAACAGGAGATAGAAACGACGTGACCGAGTCGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGA < 1:365486/140‑1 cgTGTTTTAAATATTTGCTAAATTTTGCCAATTTGGTAAAACAGGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTTTATTCCTGAAG < 1:539279/141‑1 TGTTAAAAATTTTCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAA < 2:344506/143‑1 GCTAAATTTTGCCAATTTGGTCCAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAA < 1:213715/143‑1 CTAAATTTTGCCAATTGGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAAT < 2:755871/143‑1 TAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGACGAGCAGATTGATCAAAAAATTTACCGCACGACGCCCGTATAGTCGTGAAGCTAAGTGCAAAGATAATC > 1:203138/1‑143 AAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGAGTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCG > 1:82980/1‑143 AATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGA > 2:353644/1‑143 cGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCAAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGCGAAGGTAAGTGCAAAGATAATCGATTC‑TT < 2:67460/142‑1 ATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCG < 2:716588/143‑1 CAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACAGCGGGGGGGCACACATATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCT < 2:403891/143‑1 TGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTAT < 2:839759/143‑1 CATCACAACGGGAGATAGCAATGACGTTACCGAGTGGACAGCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGTCCCGTATATTCGTGAAGGTAATTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGC < 1:194904/143‑1 ATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCG > 2:261079/1‑143 cCACAGCAGGAGATAGCAATGACGTGACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACTGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGT < 1:648192/142‑1 agagaATAGAAATGACGTTACCTAGTGGACACGCGAAGAGCAGATTGATCAAAAAATTTTCCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAACGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTG < 1:81533/138‑1 AGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAAGCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTG < 2:557817/143‑1 ATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATCTTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGCAACC > 2:242412/1‑143 ATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACC > 2:743623/1‑143 TAGCAATGACGTTACCGAGTGGACACCCGAATAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCG < 1:867590/143‑1 tgcgaggacgggACCGAGCGGACGCCCGAAGAGCAGATTGAGCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGG < 2:572357/131‑1 AGCAATGACGTTACCGAGGGGACACCCGAAGAGCCGAGTGATCAAAAAATTTCCCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAACGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGG < 2:6406/143‑1 AGCAAGGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGG < 2:807730/143‑1 AATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAC < 2:843529/143‑1 gGTTACCGAGTGGCCACCCGAAGAGCAGACTGATCAAAAAATTGACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAA < 2:188855/142‑1 GTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAGCTCGGGACCGGCAG > 2:183785/1‑143 ACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGCCTGTCTGCGTCGACGTGAAACCGTCCCCGGACGTcc > 2:728636/1‑141 CCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCG < 2:578477/143‑1 CGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGT < 1:107769/143‑1 GACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTC < 2:813118/143‑1 CCCGAAGACCAGCTTTATCAAAACATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTTCGATTGTCTGGCTGTATTCGTCAACGTGAAACCGGCACCTGAAGTGCGTGAATTCTGG < 1:210639/143‑1 AGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTG > 2:524799/1‑143 ATTGATCAAACAATTTACCTCACTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGG < 2:209621/143‑1 ATCAAAAAATTTTCCGCACTAGGCCCGTATATTCGTAAAAGTAAGTGGATGGGTGGTCGATTC‑TTTTTCGATGGTCGGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCT < 2:239880/143‑1 gAAAGTTAACGAACGAGGCACGTATAGTCAGGAAGGTAAGTGCAAAGGTAATCGATTC‑TTGTTCGATTGTCTGGCTGTATGTGCCAACGTGAAAGCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAG < 1:211169/142‑1 TTTCCCGCCCTAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAGCCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCA < 1:580197/143‑1 acgaaaTAGCCCCGGATGTTCGTGAAGGTAAGTGGAAAGACAATCGATGC‑TGGTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGGACCGGAAGAGCGTTAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAA < 1:392385/137‑1 CGCACTAGGCCCGTATATTCGTGAACGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTCACTCCTGCGGCTGGTGGATGAAGCCGCACCCGCAGGccc > 1:611497/1‑140 aTAGGCCCCTATATTCGTGAAGGTAAGTGCAAAGCTACACGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCG < 1:710567/142‑1 TAGGCCCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGGTGGAGCTGGAAGCGCAGGAATCCCGT > 2:469416/1‑143 AGGCCCGTATATTCGTGAAGGTAAGTTCCAAGATAATAGAAGT‑GTGGCGGGTGGTCCGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTT < 2:732239/143‑1 gtccggtgTATTCGGGAAGGTAAGTGCAAAGATCATCGATTC‑TTGTTCGATTGTGTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTT < 2:390110/135‑1 CCGTGTATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAC < 2:747004/143‑1 CCGTATGTTTGTGAAGGTAAGTGCAAAGATAATCGATGC‑TTTTTCGATGGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAC < 1:560454/143‑1 CCGTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAAACGAACACGGTGTGGTTTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAC > 2:639613/1‑143 GTATATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGACACCGGCACCGGACGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCT > 2:78896/1‑143 TATTCGTGTAGGTAAGTGCAAGGATAATCGATTC‑TTTTTCGATGGGCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACA < 1:408233/143‑1 TATTCGGGAGGGTAAGTGCACAGACAATCGATTC‑TTTTTCGATTGGCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGTATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACA < 1:75601/143‑1 ATTCGTGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGACTGGTGGCTTGGGCTGGAAGCGAAGGAATCTCGTTTTCCTTACAG > 2:542228/1‑143 TCGTGAAGGGAAGCGCAAAGAGAATCGATTC‑TTTTTCGAGTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATGCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTT < 2:76657/143‑1 gcGAAGGTAAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTAC < 2:64031/141‑1 gcacGTAAGTGCAAAGCTAATCGATTC‑TTTTTCGATTGTCGGGCTGTATGCGTCAACGTGGAACCGGCACCGGACGTGCGTGAATTCTGGGGCTGGTGGACGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCA < 1:165269/139‑1 gggAAGTGCAAAGATAATCGATGC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTT < 2:149392/140‑1 ACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/257759‑257907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaggtaAGTGCAAAGATAATCGATTC‑TTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTT > NC_000913/258684‑258822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |