| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908–258674 | 258683 | 10–776 | 51 [0] | [0] 52 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 48 (1.020) | 42/266 | 0.1 | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
TGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGC > NC_000913/257766‑258046 | tgtTAAAAATTTTCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa < 2:344506‑M1/143‑2 (MQ=255) gCTAAATTTTGCCAATTTGGTCCAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa < 1:213715‑M1/143‑14 (MQ=255) cTAAATTTTGCCAATTGGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat < 2:755871‑M1/143‑15 (MQ=255) tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGACGAGCAGATTGATCAAAAAATTTACCGCACGACGCCCGTATAGTCGTGAAGCTAagtgcaaagataatc > 1:203138‑M1/1‑128 (MQ=255) aaaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGAGTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcg > 1:82980‑M1/1‑127 (MQ=255) aaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga > 2:353644‑M1/1‑126 (MQ=255) cgcCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCAAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGCGAAGGTAagtgcaaagataatcgattctt < 2:67460‑M1/142‑23 (MQ=255) aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg < 2:716588‑M1/143‑28 (MQ=255) cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACAGCGGGGGGGCACACATATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct < 2:403891‑M1/143‑39 (MQ=255) tGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat < 2:839759‑M1/143‑43 (MQ=255) cATCACAACGGGAGATAGCAATGACGTTACCGAGTGGACAGCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGTCCCGTATATTCGTGAAGGTAattgcaaagataatcgattctttttcgattgtctggctgtatgc < 1:194904‑M1/143‑45 (MQ=255) aTCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg > 2:261079‑M1/1‑98 (MQ=255) ccacagCAGGAGATAGCAATGACGTGACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACTGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt < 1:648192‑M1/142‑47 (MQ=255) agagaatagaaATGACGTTACCTAGTGGACACGCGAAGAGCAGATTGATCAAAAAATTTTCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaacgataatcgattctttttcgattgtctggctgtatgcgtcaacgtg < 1:81533‑M1/138‑54 (MQ=255) aGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataagcgattctttttcgattgtctggctgtatgcgtcaacgtg < 2:557817‑M1/143‑54 (MQ=255) aTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATCTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgcaacc > 2:242412‑M1/1‑85 (MQ=255) aTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc > 2:743623‑M1/1‑85 (MQ=255) tAGCAATGACGTTACCGAGTGGACACCCGAATAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccg < 1:867590‑M1/143‑60 (MQ=255) tgcgaggacgggaccgagcggacgcCCGAAGAGCAGATTGAGCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccgg < 2:572357‑M1/131‑61 (MQ=255) aGCAATGACGTTACCGAGGGGACACCCGAAGAGCCGAGTGATCAAAAAATTTCCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaacgataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccgg < 2:6406‑M1/143‑61 (MQ=255) aGCAAGGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccgg < 2:807730‑M1/143‑61 (MQ=255) aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcac < 2:843529‑M1/143‑64 (MQ=255) ggtTACCGAGTGGCCACCCGAAGAGCAGACTGATCAAAAAATTGACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa < 2:188855‑M1/142‑69 (MQ=255) gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgagctcgggaccggcag > 2:183785‑M1/1‑74 (MQ=255) aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgcctgtctgcgtcgacgtgaaaccgtccccggacgtcc > 2:728636‑M1/1‑71 (MQ=255) ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcg < 2:578477‑M1/143‑74 (MQ=255) cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt < 1:107769‑M1/143‑75 (MQ=255) gACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattc < 2:813118‑M1/143‑81 (MQ=255) cccGAAGACCAGCTTTATCAAAACATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttttcgattgtctggctgtattcgtcaacgtgaaaccggcacctgaagtgcgtgaattctgg < 1:210639‑M1/143‑85 (MQ=255) agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg > 2:524799‑M1/1‑52 (MQ=255) aTTGATCAAACAATTTACCTCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg < 2:209621‑M1/143‑97 (MQ=255) aTCAAAAAATTTTCCGCACTAGGCCCGTATATTCGTAAAAGTAagtggatgggtggtcgattctttttcgatggtcgggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct < 2:239880‑M1/143‑101 (MQ=255) gaaagTTAACGAACGAGGCACGTATAGTCAGGAAGGTAagtgcaaaggtaatcgattcttgttcgattgtctggctgtatgtgccaacgtgaaagcggcaccggaagtgcgtgaattctggggctggtggatggagctggaag < 1:211169‑M1/142‑106 (MQ=255) tttCCCGCCCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaagccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca < 1:580197‑M1/143‑110 (MQ=255) acgaaatagccccGGATGTTCGTGAAGGTAagtggaaagacaatcgatgctggttcgattgtctggctgtatgcgtcaacgtgaaaccgggaccggaagagcgttaattctggggctggtggatggagctggaagcgcaggaa < 1:392385‑M1/137‑114 (MQ=255) cGCACTAGGCCCGTATATTCGTGAACGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtcactcctgcggctggtggatgaagccgcacccgcaggccc > 1:611497‑M1/1‑29 (MQ=255) ataGGCCCCTATATTCGTGAAGGTAagtgcaaagctacacgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccg < 1:710567‑M1/142‑119 (MQ=255) tAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgggtggagctggaagcgcaggaatcccgt > 2:469416‑M1/1‑24 (MQ=255) aGGCCCGTATATTCGTGAAGGTAagttccaagataatagaagtgtggcgggtggtccggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt < 2:732239‑M1/143‑121 (MQ=255) gtccggtgtattcgggaagGTAagtgcaaagatcatcgattcttgttcgattgtgtggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttt < 2:390110‑M1/135‑122 (MQ=255) ccGTGTATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac < 2:747004‑M1/143‑125 (MQ=255) ccGTATGTTTGTGAAGGTAagtgcaaagataatcgatgctttttcgatggtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac < 1:560454‑M1/143‑125 (MQ=255) ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaaacgaacacggtgtggtttggggctggtggatggagctggaagcgcaggaatcccgttttac > 2:639613‑M1/1‑19 (MQ=255) gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgacaccggcaccggacgtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacct > 2:78896‑M1/1‑17 (MQ=255) tatTCGTGTAGGTAagtgcaaggataatcgattctttttcgatgggctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca < 1:408233‑M1/143‑130 (MQ=255) tatTCGGGAGGGTAagtgcacagacaatcgattctttttcgattggctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgtattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca < 1:75601‑M1/143‑130 (MQ=255) atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggactggtggcttgggctggaagcgaaggaatctcgttttccttacag > 2:542228‑M1/1‑13 (MQ=255) tCGTGAAGGGAagcgcaaagagaatcgattctttttcgagtgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaatgctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtt < 2:76657‑M1/143‑133 (MQ=255) gcgaaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttac < 2:64031‑M1/141‑135 (MQ=255) gcacgtaagtgcaaagctaatcgattctttttcgattgtcgggctgtatgcgtcaacgtggaaccggcaccggacgtgcgtgaattctggggctggtggacggagctggaagcgcaggaatcccgttttacctacagttacca < 1:165269‑M1/139‑137 (MQ=255) gggaagtgcaaagataatcgatgctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtt < 2:149392‑M1/140‑140 (MQ=255) | TGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGC > NC_000913/257766‑258046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |