New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729442	33 (0.670)	17 (0.400) +GTATCAGTCTGCTTCGCAAG	4/242	6.2	30.8%	noncoding (1/76 nt)	gltW	tRNA‑Glu
	?	NC_000913	= 4168264	56 (1.130)					intergenic (+65/‑107)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.

TCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGT  >  NC_000913/2729300‑2729583                                                                                                                                               |                                                                                                                                              gcAAACAGGTCTTAACAGTCTGTTTTGAGAGATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGac                                                                                                                                               <  1:152054/142‑1 (MQ=255)  caaacaaaACTTAACAGTCTGTTTGGTGATATTGAGGTCGGCGCCTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGaca                                                                                                                                              <  2:382796/143‑1 (MQ=255)  cAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGcca                                                                                                                                              >  2:183963/1‑143 (MQ=255)    aaCAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACg                                                                                                                                            <  1:194722/143‑1 (MQ=255)       aaGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGaaa                                                                                                                                         >  1:237964/1‑143 (MQ=255)        aGACTTAACGGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGACAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGaaaa                                                                                                                                        <  2:203417/143‑1 (MQ=255)           cTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTg                                                                                                                                     <  2:638483/143‑1 (MQ=255)            ttAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGc                                                                                                                                    <  2:774767/143‑1 (MQ=40)            ttAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGc                                                                                                                                    >  2:686334/1‑143 (MQ=40)                  gTCTGTTTTGAGATATTGAGGGCGGCGACTTTCACTCACAAACCAGCAAGTGGCGCCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCa                                                                                                                              <  2:278511/143‑1 (MQ=25)                     tGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCAcgc                                                                                                                           <  2:237964/143‑1 (MQ=32)                      gTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCAcgcg                                                                                                                          >  2:418174/1‑143 (MQ=32)                        tttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGtt                                                                                                                        <  2:382243/143‑1 (MQ=32)                         ttGAGATATTGAGGTCCGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTg                                                                                                                       <  2:781008/143‑1 (MQ=17)                                atTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGata                                                                                                                <  1:849985/143‑1 (MQ=32)                                 ttGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCGGTTACCGCCGTGAAAGGGCGGTGGCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataa                                                                                                               <  2:563998/143‑2 (MQ=11)                                  tGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGCTTCAAAATTGCCATTCCTCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATAtt                                                                                                              <  2:629534/143‑1 (MQ=11)                                               tttCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCCAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGCAGGGGACACGAAAATTGCTTATCACGCGTTGCGCGATACATTCGCGTGCGGTg                                                                                                 >  1:766192/1‑143 (MQ=1)                                                                                          agctgggtgacggccgTGAAAGGGCGGTGTCCGGGGCCTCGAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGcc                                                      <  1:293982/131‑1 (MQ=1)                                                                                           ccgttggtACCGCCGTGACAGGGCTGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGCTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCt                                                     <  1:567107/136‑1 (MQ=1)                                                                                                             aggggggggggccTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATCTTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAAc                                   <  2:697882/132‑1 (MQ=0)                                                                                                                   ggagtCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTGTCATTAATAGAAAGCGAACGGCCttt                                                                  <  1:822355/103‑2 (MQ=0)                                                                                                                        ccTGCGCCTCTCGACGAAGGGGACACGAAAACTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt                        <  2:286170/143‑1 (MQ=12)                                                                                                                         cTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc                       >  1:429467/1‑143 (MQ=32)                                                                                                                          tGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCa                      <  2:418684/143‑1 (MQ=32)                                                                                                                                tctAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc                >  1:703206/1‑143 (MQ=33)                                                                                                                                 ctAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca               <  2:745384/143‑1 (MQ=35)                                                                                                                                   aGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc             <  2:250851/143‑1 (MQ=37)                                                                                                                                    gACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACCCGTAAACGCATAGCTATTCACTTTtcatca            >  1:460591/1‑143 (MQ=255)                                                                                                                                     aCGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAg           >  2:367532/1‑143 (MQ=37)                                                                                                                                       gAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGAc         >  2:186592/1‑143 (MQ=37)                                                                                                                                          ggggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAAt      <  2:220426/143‑1 (MQ=39)                                                                                                                                              gcacGAAAGTTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgt  <  1:183963/142‑1 (MQ=255)                                                                                                                                              acacGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgt  <  2:606505/143‑1 (MQ=39)                                                                                                                                               |                                                                                                                                              TCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGT  >  NC_000913/2729300‑2729583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.