| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2729442 | 33 (0.670) | 17 (0.400) +GTATCAGTCTGCTTCGCAAG |
4/242 | 6.2 | 30.8% | noncoding (1/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 4168264 | 56 (1.130) | intergenic (+65/‑107) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCC > NC_000913/4168125‑4168391 | aCTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCATAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCAGATAGAAAGTGAAAAGCAAGGCGTTTa > 1:400526/1‑143 (MQ=255) gagtCATGACTGGGGTGATGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTg < 1:410670/140‑1 (MQ=255) gATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTCGGGGCCCATGTTTCGTGATCACCTCCTTACCGTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTg < 2:588352/143‑1 (MQ=14) atttattattgtggTTAAGTTGTAACAAGGTAAACTTTGGGGAACTTGTGGTTTGATCATCTTCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTgg < 1:374528/131‑1 (MQ=14) agtCATGACGGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGACCCTGCGGTTGGATCACCTCCTTACCTTAAAGATGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGCTTCCGCGTggg < 1:426667/141‑1 (MQ=11) gtCATGACGGGGGTCAAGTCGTAACACGGTAACCGGAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTggg < 2:41726/142‑1 (MQ=255) aTGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCGGCGGTGGGATCACCACCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACAAAGATTGTGTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAga > 1:167126/1‑142 (MQ=14) gACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGa < 1:479170/143‑1 (MQ=39) ggggTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCt < 1:529147/143‑1 (MQ=39) gTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAACGCAAGGCGTTTACGCGCTGGGAGTGAGGCTGac > 1:50295/1‑142 (MQ=255) gtgcGTAACAAGGTAACCGTAGGGGCACCTGCTGTTGGATCACCTCTTCACCTTAAAGAAGCGTACTTTGTAGTGCGCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAgaga < 1:212154/140‑1 (MQ=14) cgTCGTACCAAGGTAACCGTAGGGGACCCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAgaga < 2:500767/142‑1 (MQ=255) aGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAgaga < 2:152596/143‑1 (MQ=255) tCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAAt > 1:240940/1‑143 (MQ=39) gTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACGTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTc > 2:450866/1‑143 (MQ=255) tgTAGGTGTACCTGCGCTTGGATCAGCTCCGTACCTCACAGAAGCGTACTTTGTAGTGGTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCttt < 2:824766/142‑1 (MQ=14) cGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCttt < 2:613720/143‑1 (MQ=255) aCCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATg > 2:209701/1‑143 (MQ=40) gCGGTTGGACCACCTCCTTACCTCCAAGAAGCGTACTGTGTAGCGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAg < 2:98704/143‑1 (MQ=14) gCGGTAGTAGCACCTCCTTATCTTCAAGAAGCGTACTTTGTATTGCTCACACAGATTGTCTGATAGAAAGTGAAAGGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAg < 1:710964/143‑1 (MQ=14) cGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGAGTGTCTGATAGAAAGTGAAAAGCAAGGCGTATACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGc < 1:427241/143‑1 (MQ=255) ggTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGCGAGGCTGAAGAGAATAAGACAGTTCGCTGTCTCTTAATGAAAGCt > 1:609364/1‑143 (MQ=14) gTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTc < 2:510460/143‑1 (MQ=40) ggATCTCTTCCTTACCGTAAAGAGGCGTGCTGTGTGGTGCTCACGCCGATTGTCGGATAGAAAGGGAAAGGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCAcc < 1:560866/143‑1 (MQ=14) ggATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAACAAGGCGATTACGCGTTGGGAGTACGGAAGAAGAGAATAAGGACATTCGCCTTCTATTAATGAAAGCTCAcc > 1:226347/1‑143 (MQ=14) tCACCTCCGTACCTTAAAGAAGCGTACTGTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCTGTTCGCTATCTGTGAATGAAAGCTCAcaata > 1:361368/1‑139 (MQ=14) cttaccttaAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGaac > 1:117534/1‑142 (MQ=255) aaaGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACg > 2:36868/1‑143 (MQ=255) agaagCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCa > 2:454056/1‑143 (MQ=255) gaagCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCac > 1:79648/1‑142 (MQ=255) cGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcgcg < 2:526296/143‑1 (MQ=39) gTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGt > 2:798757/1‑143 (MQ=255) cTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGAt > 2:483807/1‑143 (MQ=255) cTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGAt > 2:450482/1‑143 (MQ=255) tttGTAGTGCTCACACAGATTGTCTGATAGAAAGTGATAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCAATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGGGATa > 1:272091/1‑143 (MQ=255) gttGGAGTGCACACAGAGATTGTCGGAGAGAAAGTGAAAAGCAAGGCTTTTACGCGGTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCGCACCCTACACGAAAATATCACGcgttgcgtgata < 2:267366/142‑12 (MQ=11) ttGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTATCTATTAATGAAAGCTCATCCTACACGAAATTATCACGCAACGCGTGATaa < 1:450866/143‑1 (MQ=255) aGTGCTCGCACAGATTGGCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAAGAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCaa < 2:15955/143‑1 (MQ=255) gTGCTCACACAGATTGTCTGATAGAAAGTGATTATCTATTCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAAt < 1:833170/143‑1 (MQ=11) gTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTGACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAAt < 2:767171/143‑1 (MQ=38) tGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAAtt > 1:515583/1‑143 (MQ=39) tGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAAtt > 1:397180/1‑143 (MQ=39) tCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTc > 2:718483/1‑143 (MQ=39) gcacacaTATTGTCGGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGAGAAGCAATTTTc < 2:23792/142‑1 (MQ=255) cacacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCg < 2:490540/143‑1 (MQ=38) agtgaGATTGTCTGATAGAAAGTGAAAAGGAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTACTAATGAAAGATCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt < 1:843099/139‑1 (MQ=255) acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGGTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt > 2:556757/1‑143 (MQ=38) acaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgtgt > 2:709898/1‑143 (MQ=39) tGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCtt < 1:221908/143‑1 (MQ=37) cTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGAATCTCTTGATAAGCAATTTTCGTGTCCCCTTCGt > 1:8219/1‑143 (MQ=255) aTAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGCGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTa < 2:50295/143‑1 (MQ=25) tAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTag < 2:348956/143‑1 (MQ=34) gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTagag < 1:850171/143‑1 (MQ=32) aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCGTACACGAAAATATCACGCAACGCGAGATAAGCAATTTTCGTGTCGCCTTCGTCGAGGGGc > 1:595312/1‑143 (MQ=11) aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATCTTCGTGTCCCCCTCGTCTAGCGGc > 1:163109/1‑143 (MQ=12) gagAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGccc < 2:713741/141‑1 (MQ=17) | ACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCC > NC_000913/4168125‑4168391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |