Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,909,311 Δ774 bp [pstA][pstC] [pstA], [pstC]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3909311 3910084 774 50 [0] [0] 50 [pstA]–[pstC] [pstA], [pstC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 39093100 (0.000)48 (0.950) 42/268 0.1 100% coding (129/891 nt) pstA phosphate ABC transporter permease
?NC_000913 3910085 = 0 (0.000)coding (313/960 nt) pstC phosphate ABC transporter permease

CCCACAAAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3909162‑3909310
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTC  >  NC_000913/3910085‑3910224
                                                                                                                                                                                                                                                                                                 
CCCACAAAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATC                                                                                                                                                    >  1:847161/1‑143
  CACAAAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTACAATCCAGATCAG                                                                                                                                                  >  2:471637/1‑143
  CACAAAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTAGACATCAAAATCCAGATCAG                                                                                                                                                  >  1:4556/1‑143
       AATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGACGGGCATCAAACTCCCGATCAGCCAGG                                                                                                                                             >  1:713767/1‑143
          ttACAGCCCGCTACCCGCCATAGCGTTCGCCAGACCAGCGCCTTCCGGATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGC                                                                                                                                          <  1:609451/141‑1
                 CCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGATATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAAGCGAAAGCTCg                                                                                                                                   >  1:466183/1‑142
                              GAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGG                                                                                                                      <  1:753444/143‑1
                                      GCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCG                                                                                                              >  1:628390/1‑143
                                              ACCCCCTCCCGTATCGGGCGGCGGCGTCATTGCAGTGACCAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCAC                                                                                                      <  2:658207/143‑1
                                                 ACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCAC                                                                                                      <  1:456732/140‑1
                                                 ACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCAC                                                                                                      >  2:456732/1‑140
                                                   CTTCCGTATTGGGCGGCGGCGTCAGTTCAGGGAGCGGCTCCAGCGACATACCGGCGATACCGCGAGTGATGGTGGACATTAAAAGCCGGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGGAACTCGCCGGGA                                                                                                 <  2:621938/143‑1
                                                    TTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGAC                                                                                                >  1:93202/1‑143
                                                    TTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCGCAGTCAGGACCAGGACGATACCGCACCTCACCGCGAC                                                                                                >  2:649191/1‑143
                                                      tccTATTGGGCGGTGGCGTTTTTTTAGTGAGCTGCGCCAGCGACCTACCGTCGATACCGCGAGTGATGTTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTAAAGAACAGGCCTATACCTAAACTCACCGGGACGG                                                                                              <  2:332218/140‑1
                                                        GTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCG                                                                                            >  1:909641/1‑143
                                                         tagcGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGGCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGA                                                                                           <  1:407049/139‑1
                                                         TATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGA                                                                                           >  1:101646/1‑143
                                                          atgGGGCGGCGGCGTCATTCCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCTAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAGCTCACCGGGACGGCGAT                                                                                          <  1:484574/140‑1
                                                          ATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGAT                                                                                          <  1:623220/143‑1
                                                             GGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAG                                                                                       <  1:561916/143‑1
                                                                  GCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCG                                                                                  <  1:812032/143‑1
                                                                    GGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCG                                                                                <  1:473383/143‑1
                                                                           tggCAGTGAGCAGCGCCAGCGACATACCGGCGATGCCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCAAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTAACCGGGACGGCGATCAGCAGCGCGATAAACG                                                                         <  2:253131/140‑1
                                                                             TCAGTGAACAGCGCCAGCGACAGACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAGACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAA                                                                       <  1:818682/143‑1
                                                                                GTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAACTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATCGACGAAGTC                                                                    >  2:756123/1‑143
                                                                                 ttacccGCGCCAGCGACAGACCGGCGATACCGCGATCGAGTGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGTACAGGGCGATATCGAAACTCACCGTGACGGCGATCAGCAGCGCGATAAACGAAGTCA                                                                   <  1:103759/137‑1
                                                                                 TGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCA                                                                   <  1:248148/143‑1
                                                                                   AACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCCGGAAGGCGTTCAGCCTCGCGATAAACGAAGTCACC                                                                 >  1:722260/1‑143
                                                                                     CAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAA                                                               >  2:527728/1‑143
                                                                                      AGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAAGGCGATAATTAAACTCACCGGCACGGAGCACAGCAGCGCAAGCAAAGAAGTAACCAAC                                                              >  2:107004/1‑143
                                                                                          CCAGCGACATACCGTCGAGACCGCGAGTGAGGGTGGACATTAAAAGCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGACGCACCGCCGCGCGATAAACGAAGTCACCAACGTAC                                                          <  2:566187/143‑1
                                                                                             GCGACATACCGCCGATACCGCGAGTGACGGTGGACATTAAAATCCAGTTCAGCCAGCCGCAAGCTCAGTCAGGAACAGGGCGATACCGACACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGT                                                       <  1:110940/143‑1
                                                                                                   TACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCGCAGTCAGGAACAGTGCGATACCGAAACTCACCGGGACGGCGATCAGCATCGCGATAAACGAAGTCACCGACGTACCGTAGATag                                                 >  1:444306/1‑141
                                                                                                    ACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGG                                                <  2:101646/143‑1
                                                                                                     CCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCTATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGC                                               >  1:567397/1‑143
                                                                                                           ATACCGCGAGTGATGGCGGACATTAAAATCCAGAACAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGC                                         >  1:708962/1‑143
                                                                                                               CGCGGGGGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCC                                     <  2:470108/143‑1
                                                                                                                  GAGTCATGAGGGACAGTACACGCCAGACCAGCCACGCGCAAGCTCAGTCAGGAACAGCGCGGTACCGAACGTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGT                                  <  2:505363/143‑1
                                                                                                                   AGTGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTA                                 <  1:102536/143‑1
                                                                                                                     TGATGGTGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACGCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACGGTACATCGGCACCAGCGCCCGGTGGA                               >  2:675023/1‑143
                                                                                                                         tgtgtcccTTACAATCCAGCTCCGCCACGCGCAAGCTCCGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATC                           <  1:878354/135‑1
                                                                                                                           TGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTCGATCGGCACCAGCGCCCCGTAGCTATCGT                         >  1:181914/1‑143
                                                                                                                           TGGACATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCAATACCAAAACACACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGT                         >  1:264276/1‑143
                                                                                                                              ACATTAGAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCG                      <  2:901907/143‑1
                                                                                                                               ccTTAAAATCCAGATCGCCCAGGCGCAGGCGCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGG                     <  2:131351/141‑1
                                                                                                                                ATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAA                                                                       >  2:335040/1‑92
                                                                                                                                ATTAAAATCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAA                                                                       <  1:335040/92‑1
                                                                                                                                ATTAAAACCCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGT                    <  1:536190/143‑1
                                                                                                                                        CCAGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCA            >  1:365145/1‑143
                                                                                                                                          AGATCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGCAGTCACCAACGTCGCGTAGATGGGCACCAGCGCCCCGTAGAAATTATTTGGTGCATCacgcg          >  1:465988/1‑138
                                                                                                                                                 CCAGGCGCACGCCCGGCCAGGAACAGAGCGATACCGTAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGACGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGT   <  2:592993/143‑1
                                                                                                                                                  CAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAACCTCACCCGGGCGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTC  <  1:253601/143‑1
                                                                                                                                                                                                                                                                                                 
CCCACAAAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3909162‑3909310
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTC  >  NC_000913/3910085‑3910224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.