| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,311 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909311 | 3910084 | 774 | 50 [0] | [0] 50 | [pstA]–[pstC] | [pstA], [pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909310 | 0 (0.000) | 48 (0.950) | 42/268 | 0.1 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910085 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
GACATGATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTC > NC_000913/3909943‑3910224 | aattaacagcccgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatgacgggcatcaaactcccgatcagccagg > 1:713767‑M2/143‑143 (MQ=255) ttacagcccgctacccgccatagcgttcgccagaccagcgccttccggattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccaggcgc < 1:609451‑M2/4‑1 (MQ=255) ccgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgatataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccaaGCGAAAGctcg > 1:466183‑M2/133‑142 (MQ=255) gagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAggg < 1:753444‑M2/24‑1 (MQ=255) gccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCg > 1:628390‑M2/112‑143 (MQ=255) accccctcccgtatcgggcggcggcgtcattgcagtgaccagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCAc < 2:658207‑M2/40‑1 (MQ=255) accttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCAc > 2:456732‑M2/101‑140 (MQ=255) accttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCAc < 1:456732‑M2/40‑1 (MQ=255) cttccgtattgggcggcggcgtcagttcagggagcggctccagcgacataccggcgataccgcgagtgatggtggacattaaaagccggatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGGAACTCGCCGGGa < 2:621938‑M2/45‑1 (MQ=255) ttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGAc > 1:93202‑M2/98‑143 (MQ=255) ttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCGCAGTCAGGACCAGGACGATACCGCACCTCACCGCGAc > 2:649191‑M2/98‑143 (MQ=255) tcctattgggcggtggcgtttttttagtgagctgcgccagcgacctaccgtcgataccgcgagtgatgttggacattaaaatccagatcagccagGCGCAAGCTCAGTAAAGAACAGGCCTATACCTAAACTCACCGGGACgg < 2:332218‑M2/48‑1 (MQ=255) gtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCg > 1:909641‑M2/94‑143 (MQ=255) tattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGa > 1:101646‑M2/93‑143 (MQ=255) tagcgggcggcggcgtcatttcagtgaacagcgccagcgacataccggcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGa < 1:407049‑M2/51‑1 (MQ=255) attgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGAt < 1:623220‑M2/52‑1 (MQ=255) atggggcggcggcgtcattccagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagctagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAGCTCACCGGGACGGCGAt < 1:484574‑M2/52‑1 (MQ=255) gggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATcag < 1:561916‑M2/55‑1 (MQ=255) gcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAgcg < 1:812032‑M2/60‑1 (MQ=255) ggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGcgcg < 1:473383‑M2/62‑1 (MQ=255) tggcagtgagcagcgccagcgacataccggcgatgccgcgagtgatggtggacattaaaatccagatcagcaagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTAACCGGGACGGCGATCAGCAGCGCGATAAACg < 2:253131‑M2/69‑1 (MQ=255) tcagtgaacagcgccagcgacagaccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAGACTCACCGGGACGGCGATCAGCAGCGCGATAAACGaa < 1:818682‑M2/71‑1 (MQ=255) gtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAACTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATCGACGAAGTc > 2:756123‑M2/70‑143 (MQ=255) ttacccgcgccagcgacagaccggcgataccgcgatcgagtgtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGTACAGGGCGATATCGAAACTCACCGTGACGGCGATCAGCAGCGCGATAAACGAAGTCa < 1:103759‑M2/75‑1 (MQ=255) tgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCa < 1:248148‑M2/75‑1 (MQ=255) aacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCCGGAAGGCGTTCAGCCTCGCGATAAACGAAGTCAcc > 1:722260‑M2/67‑143 (MQ=255) cagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCaa > 2:527728‑M2/65‑143 (MQ=255) agcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAAGGCGATAATTAAACTCACCGGCACGGAGCACAGCAGCGCAAGCAAAGAAGTAACCAAc > 2:107004‑M2/64‑143 (MQ=255) ccagcgacataccgtcgagaccgcgagtgagggtggacattaaaagccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGACGCACCGCCGCGCGATAAACGAAGTCACCAACGTAc < 2:566187‑M2/84‑1 (MQ=255) gcgacataccgccgataccgcgagtgacggtggacattaaaatccagttcagccagCCGCAAGCTCAGTCAGGAACAGGGCGATACCGACACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGt < 1:110940‑M2/87‑1 (MQ=255) taccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCGCAGTCAGGAACAGTGCGATACCGAAACTCACCGGGACGGCGATCAGCATCGCGATAAACGAAGTCACCGACGTACCGTAgatag > 1:444306‑M2/51‑141 (MQ=255) accgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCgg < 2:101646‑M2/94‑1 (MQ=255) ccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCTATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGc > 1:567397‑M2/49‑143 (MQ=255) ataccgcgagtgatggcggacattaaaatccagaacagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAgc > 1:708962‑M2/43‑143 (MQ=255) cgcgggggatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGccc < 2:470108‑M2/105‑1 (MQ=255) gagtcatgagggacagtacacgccagaccagccacGCGCAAGCTCAGTCAGGAACAGCGCGGTACCGAACGTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGt < 2:505363‑M2/108‑1 (MQ=255) agtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTa < 1:102536‑M2/109‑1 (MQ=255) tgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACGCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACGGTACATCGGCACCAGCGCCCGGTGGa > 2:675023‑M2/33‑143 (MQ=255) tgtgtcccttacaatccagctccgccacGCGCAAGCTCCGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATc < 1:878354‑M2/115‑1 (MQ=255) tggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTCGATCGGCACCAGCGCCCCGTAGCTATCGt > 1:181914‑M2/27‑143 (MQ=255) tggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCAATACCAAAACACACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGt > 1:264276‑M2/27‑143 (MQ=255) acattagaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCg < 2:901907‑M2/120‑1 (MQ=255) ccttaaaatccagatcgcccagGCGCAGGCGCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCgg < 2:131351‑M2/121‑1 (MQ=255) attaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGaa > 2:335040‑M2/22‑92 (MQ=255) attaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGaa < 1:335040‑M2/71‑1 (MQ=255) attaaaacccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGt < 1:536190‑M2/122‑1 (MQ=255) ccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCa > 1:365145‑M2/14‑143 (MQ=255) agatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGCAGTCACCAACGTCGCGTAGATGGGCACCAGCGCCCCGTAGAAATTATTTGGtgcatcacgcg > 1:465988‑M2/12‑138 (MQ=255) ccagGCGCACGCCCGGCCAGGAACAGAGCGATACCGTAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGACGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGt < 2:592993‑M2/139‑1 (MQ=255) cagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAACCTCACCCGGGCGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTc < 1:253601‑M2/140‑1 (MQ=255) | GACATGATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTC > NC_000913/3909943‑3910224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |