| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,311 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909311 | 3910084 | 774 | 50 [0] | [0] 50 | [pstA]–[pstC] | [pstA], [pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909310 | 0 (0.000) | 48 (0.950) | 42/268 | 0.1 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910085 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
AATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCC > NC_000913/3909169‑3909450 | aaTTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGACGGGCATCAAACTCCCGATCAGCCAGg > 1:713767‑M1/1‑142 (MQ=255) ttacaGCCCGCTACCCGCCATAGCGTTCGCCAGACCAGCGCCTTCCGGATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgc < 1:609451‑M1/141‑5 (MQ=255) ccGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGATATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAAgcgaaagctcg > 1:466183‑M1/1‑132 (MQ=255) gagCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacaggg < 1:753444‑M1/143‑25 (MQ=255) gCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccg > 1:628390‑M1/1‑111 (MQ=255) acccccTCCCGTATCGGGCGGCGGCGTCATTGCAGTGACCAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcac < 2:658207‑M1/143‑41 (MQ=255) accTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcac > 2:456732‑M1/1‑100 (MQ=255) accTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcac < 1:456732‑M1/140‑41 (MQ=255) cTTCCGTATTGGGCGGCGGCGTCAGTTCAGGGAGCGGCTCCAGCGACATACCGGCGATACCGCGAGTGATGGTGGACATTAAAAGCCGGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccggaactcgccggga < 2:621938‑M1/143‑46 (MQ=255) ttCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggac > 1:93202‑M1/1‑97 (MQ=255) ttCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagcgcagtcaggaccaggacgataccgcacctcaccgcgac > 2:649191‑M1/1‑97 (MQ=255) tcctattGGGCGGTGGCGTTTTTTTAGTGAGCTGCGCCAGCGACCTACCGTCGATACCGCGAGTGATGTTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtaaagaacaggcctatacctaaactcaccgggacgg < 2:332218‑M1/140‑49 (MQ=255) gTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcg > 1:909641‑M1/1‑93 (MQ=255) tagcgggcggcGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGGCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcga < 1:407049‑M1/139‑52 (MQ=255) tATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcga > 1:101646‑M1/1‑92 (MQ=255) atggggcggCGGCGTCATTCCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCTAGgcgcaagctcagtcaggaacagggcgataccgaagctcaccgggacggcgat < 1:484574‑M1/140‑53 (MQ=255) aTTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgat < 1:623220‑M1/143‑53 (MQ=255) gggCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcag < 1:561916‑M1/143‑56 (MQ=255) gcggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcg < 1:812032‑M1/143‑61 (MQ=255) ggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcg < 1:473383‑M1/143‑63 (MQ=255) tggcagtGAGCAGCGCCAGCGACATACCGGCGATGCCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCAAGgcgcaagctcagtcaggaacagggcgataccgaaactaaccgggacggcgatcagcagcgcgataaacg < 2:253131‑M1/140‑70 (MQ=255) tCAGTGAACAGCGCCAGCGACAGACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgagactcaccgggacggcgatcagcagcgcgataaacgaa < 1:818682‑M1/143‑72 (MQ=255) gTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaaactcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgatcgacgaagtc > 2:756123‑M1/1‑69 (MQ=255) ttacccgcgccagcgaCAGACCGGCGATACCGCGATCGAGTGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggtacagggcgatatcgaaactcaccgtgacggcgatcagcagcgcgataaacgaagtca < 1:103759‑M1/137‑76 (MQ=255) tGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtca < 1:248148‑M1/143‑76 (MQ=255) aaCAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcacccggaaggcgttcagcctcgcgataaacgaagtcacc > 1:722260‑M1/1‑66 (MQ=255) cAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaa > 2:527728‑M1/1‑64 (MQ=255) aGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacaaggcgataattaaactcaccggcacggagcacagcagcgcaagcaaagaagtaaccaac > 2:107004‑M1/1‑63 (MQ=255) ccAGCGACATACCGTCGAGACCGCGAGTGAGGGTGGACATTAAAAGCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacgacgcaccgccgcgcgataaacgaagtcaccaacgtac < 2:566187‑M1/143‑85 (MQ=255) gCGACATACCGCCGATACCGCGAGTGACGGTGGACATTAAAATCCAGTTCAGCCAGccgcaagctcagtcaggaacagggcgataccgacactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgt < 1:110940‑M1/143‑88 (MQ=255) tACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagcgcagtcaggaacagtgcgataccgaaactcaccgggacggcgatcagcatcgcgataaacgaagtcaccgacgtaccgtagatag > 1:444306‑M1/1‑50 (MQ=255) aCCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcgg < 2:101646‑M1/143‑95 (MQ=255) ccGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggctataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggc > 1:567397‑M1/1‑48 (MQ=255) aTACCGCGAGTGATGGCGGACATTAAAATCCAGAACAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagc > 1:708962‑M1/1‑42 (MQ=255) cgcgGGGGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccc < 2:470108‑M1/143‑106 (MQ=255) gAGTCATGAGGGACAGTACACGCCAGACCAGCCACgcgcaagctcagtcaggaacagcgcggtaccgaacgtcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgt < 2:505363‑M1/143‑109 (MQ=255) aGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgta < 1:102536‑M1/143‑110 (MQ=255) tGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaacgcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtacggtacatcggcaccagcgcccggtgga > 2:675023‑M1/1‑32 (MQ=255) tgtgtcccttacaatccaGCTCCGCCACgcgcaagctccgtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatc < 1:878354‑M1/135‑116 (MQ=255) tggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtcgatcggcaccagcgccccgtagctatcgt > 1:181914‑M1/1‑26 (MQ=255) tggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcaataccaaaacacaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgt > 1:264276‑M1/1‑26 (MQ=255) aCATTAGAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcg < 2:901907‑M1/143‑121 (MQ=255) ccttaaAATCCAGATCGCCCAGgcgcaggcgcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcgg < 2:131351‑M1/141‑122 (MQ=255) aTTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaa > 2:335040‑M1/1‑21 (MQ=255) aTTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaa < 1:335040‑M1/92‑72 (MQ=255) aTTAAAACCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggt < 1:536190‑M1/143‑123 (MQ=255) ccAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatccca > 1:365145‑M1/1‑13 (MQ=255) aGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgcagtcaccaacgtcgcgtagatgggcaccagcgccccgtagaaattatttggtgcatcacgcg > 1:465988‑M1/1‑11 (MQ=255) ccAGgcgcacgcccggccaggaacagagcgataccgtaactcaccgggacggcgatcagcagcgcgataaacgacgtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttggt < 2:592993‑M1/143‑140 (MQ=255) cAGgcgcaagctcagtcaggaacagggcgataccgaacctcacccgggcggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttggtc < 1:253601‑M1/143‑141 (MQ=255) | AATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCC > NC_000913/3909169‑3909450 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |