| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 603,467 | Δ5,885 bp | [ybdG]–insL‑2 | [ybdG], nfsB, ybdF, ybdJ, ybdK, sokE, hokE, insL‑2 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 603467 | 609351 | 5885 | 64 [0] | [0] 66 | [ybdG]–insL‑2 | [ybdG],nfsB,ybdF,ybdJ,ybdK,sokE,hokE,insL‑2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 603466 | 0 (0.000) | 62 (0.910) | 31/64 | 0.1 | 100% | coding (1198/1248 nt) | ybdG | miniconductance mechanosensitive channel YbdG |
| ? | NC_000913 | 609352 = | 0 (0.000) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
ACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603431‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGAT > NC_000913/609352‑609385 ACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCG > 1:1801017/1‑35 CCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAG < 1:7338784/35‑1 CCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAG < 1:3550338/35‑1 CCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAG < 1:6771544/35‑1 CCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAA < 1:4133623/35‑1 CCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAA < 1:7399506/35‑1 CCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAA < 1:3484205/35‑1 CCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAA < 1:281570/35‑1 CAGAGAGCGAATATCATTGCCGGTTGGCGAGTAAT < 1:784643/35‑1 CAGAGAGCGAATATCATTGCCGGTTGGCGAGTAAT < 1:1659661/35‑1 CAGAGAGCGAATATCATTGCCGGTTGGCGAGTAAT > 1:2339813/1‑35 GAGAGCGAATATCATTGCCGGTTGGCGAGTAATCC < 1:4211517/35‑1 GAGAGCGAATATCATTGCCGGTTGGCGAGTAATCC < 1:5020668/35‑1 GAGAGCGAATATCATTGCCGGTTGGCGAGTAATCC > 1:5124139/1‑35 AGAGCGAATATCATTGCCGGTTGGCGAGTAATCCC < 1:2778102/35‑1 AGAGCGAATATCATTGCCGGTTGGCGAGTAATCCC > 1:5886730/1‑35 AGAGCGAATATCATTGCCGGTTGGCGAGTAATCCC > 1:6373495/1‑35 AGAGCGAATATCATTGCCGGTTGGCGAGTAATCCC < 1:7017969/35‑1 AGAGCGAATATCATTGCCGGTTGGCGAGTAATCCC < 1:7432225/35‑1 AGCGAATATCATTGCCGGTTGGCGAGTAATCCCCG < 1:4995397/35‑1 AGCGAATATCATTGCCGGTTGGCGAGTAATCCCCG > 1:4104136/1‑35 AGCGAATATCATTGCCGGTTGGCGAGTAATCCCCG < 1:7402175/35‑1 AGCGAATATCATTGCCGGTTGGCGAGTAATCCCCG < 1:448289/35‑1 CGAATATCATTGCCGGTTGGCGAGTAATCCCCGCA < 1:6039453/35‑1 CGAATATCATTGCCGGTTGGCGAGTAATCCCCGCA > 1:7136659/1‑35 AATATCATTGCCGGTTGGCGAGTAATCCCCGCATA > 1:1057980/1‑35 AATATCATTGCCGGTTGGCGAGTAATCCCCGCATA > 1:5329003/1‑35 AATATCATTGCCGGTTGGCGAGTAATCCCCGCATA > 1:4765518/1‑35 AATATCATTGCCGGTTGGCGAGTAATCCCCGCATA > 1:4765481/1‑35 AATATCATTGCCGGTTGGCGAGTAATCCCCGCATA < 1:4094687/35‑1 AATATCATTGCCGGTTGGCGAGTAATCCCCGCATA < 1:4052082/35‑1 AATATCATTGCCGGTTGGCGAGTAATCCCCGCATA > 1:1035902/1‑35 ATATCATTGCCGGTTGGCGAGTAATCCCCGCATAT < 1:1691354/35‑1 ATATCATTGCCGGTTGGCGAGTAATCCCCGCATAT > 1:3820237/1‑35 ATATCATTGCCGGTTGGCGAGTAATCCCCGCATAT > 1:181249/1‑35 TATCATTGCCGGTTGGCGAGTAATCCCCGCATATC > 1:7389666/1‑35 TCATTGCCGGTTGGCGAGTAATCCCCGCATATCCG > 1:4556919/1‑35 TCATTGCCGGTTGGCGAGTAATCCCCGCATATCCG > 1:136233/1‑35 ATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGT > 1:4319541/1‑35 ATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGT > 1:1158215/1‑35 ATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGT > 1:2908609/1‑35 TTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTT > 1:392080/1‑35 TTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTT > 1:5366854/1‑35 TGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTG < 1:7896256/35‑1 TGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTG < 1:6095780/35‑1 GCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT > 1:5636091/1‑35 GCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT < 1:2490919/35‑1 GCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT > 1:4930884/1‑35 GCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT < 1:4942331/35‑1 CCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTC > 1:5484162/1‑35 CGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCA < 1:5418454/35‑1 GTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGG > 1:2341117/1‑35 GTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGG > 1:6579088/1‑35 TTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGT > 1:5422532/1‑35 TTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGT > 1:6899348/1‑35 TTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGT > 1:496928/1‑35 GGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCA < 1:4874376/35‑1 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAG < 1:4433599/35‑1 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAG > 1:1762279/1‑35 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAG < 1:1788613/35‑1 CGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGG > 1:7083033/1‑35 CGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGG > 1:2820534/1‑35 CGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGG > 1:2820496/1‑35 GAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGA < 1:1367221/35‑1 AGTAATCCCCGCATATCCGGTTGTCAGGTCAGGAT > 1:4781125/1‑35 ACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603431‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGAT > NC_000913/609352‑609385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |