| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 603,467 | Δ5,885 bp | [ybdG]–insL‑2 | [ybdG], nfsB, ybdF, ybdJ, ybdK, sokE, hokE, insL‑2 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 603467 | 609351 | 5885 | 64 [0] | [0] 66 | [ybdG]–insL‑2 | [ybdG],nfsB,ybdF,ybdJ,ybdK,sokE,hokE,insL‑2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 603466 | 0 (0.000) | 62 (0.910) | 31/64 | 0.1 | 100% | coding (1198/1248 nt) | ybdG | miniconductance mechanosensitive channel YbdG |
| ? | NC_000913 | 609352 = | 0 (0.000) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
CCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATC > NC_000913/603433‑603500 | ccGCCAGAGAGCGAATATCATTGCCGGTTGGCGAg < 1:3550338‑M1/35‑2 (MQ=255)ccGCCAGAGAGCGAATATCATTGCCGGTTGGCGAg < 1:7338784‑M1/35‑2 (MQ=255)ccGCCAGAGAGCGAATATCATTGCCGGTTGGCGAg < 1:6771544‑M1/35‑2 (MQ=255) ccAGAGAGCGAATATCATTGCCGGTTGGCGAgtaa < 1:4133623‑M1/35‑5 (MQ=255) ccAGAGAGCGAATATCATTGCCGGTTGGCGAgtaa < 1:3484205‑M1/35‑5 (MQ=255) ccAGAGAGCGAATATCATTGCCGGTTGGCGAgtaa < 1:7399506‑M1/35‑5 (MQ=255) ccAGAGAGCGAATATCATTGCCGGTTGGCGAgtaa < 1:281570‑M1/35‑5 (MQ=255) cAGAGAGCGAATATCATTGCCGGTTGGCGAgtaat < 1:784643‑M1/35‑6 (MQ=255) cAGAGAGCGAATATCATTGCCGGTTGGCGAgtaat > 1:2339813‑M1/1‑30 (MQ=255) cAGAGAGCGAATATCATTGCCGGTTGGCGAgtaat < 1:1659661‑M1/35‑6 (MQ=255) gagagCGAATATCATTGCCGGTTGGCGAgtaatcc < 1:4211517‑M1/35‑8 (MQ=255) gagagCGAATATCATTGCCGGTTGGCGAgtaatcc > 1:5124139‑M1/1‑28 (MQ=255) gagagCGAATATCATTGCCGGTTGGCGAgtaatcc < 1:5020668‑M1/35‑8 (MQ=255) agagCGAATATCATTGCCGGTTGGCGAgtaatccc > 1:6373495‑M1/1‑27 (MQ=255) agagCGAATATCATTGCCGGTTGGCGAgtaatccc < 1:2778102‑M1/35‑9 (MQ=255) agagCGAATATCATTGCCGGTTGGCGAgtaatccc > 1:5886730‑M1/1‑27 (MQ=255) agagCGAATATCATTGCCGGTTGGCGAgtaatccc < 1:7017969‑M1/35‑9 (MQ=255) agagCGAATATCATTGCCGGTTGGCGAgtaatccc < 1:7432225‑M1/35‑9 (MQ=255) agCGAATATCATTGCCGGTTGGCGAgtaatccccg < 1:7402175‑M1/35‑11 (MQ=255) agCGAATATCATTGCCGGTTGGCGAgtaatccccg < 1:448289‑M1/35‑11 (MQ=255) agCGAATATCATTGCCGGTTGGCGAgtaatccccg > 1:4104136‑M1/1‑25 (MQ=255) agCGAATATCATTGCCGGTTGGCGAgtaatccccg < 1:4995397‑M1/35‑11 (MQ=255) cGAATATCATTGCCGGTTGGCGAgtaatccccgca < 1:6039453‑M1/35‑13 (MQ=255) cGAATATCATTGCCGGTTGGCGAgtaatccccgca > 1:7136659‑M1/1‑23 (MQ=255) aaTATCATTGCCGGTTGGCGAgtaatccccgcata > 1:4765518‑M1/1‑21 (MQ=255) aaTATCATTGCCGGTTGGCGAgtaatccccgcata > 1:4765481‑M1/1‑21 (MQ=255) aaTATCATTGCCGGTTGGCGAgtaatccccgcata > 1:5329003‑M1/1‑21 (MQ=255) aaTATCATTGCCGGTTGGCGAgtaatccccgcata > 1:1057980‑M1/1‑21 (MQ=255) aaTATCATTGCCGGTTGGCGAgtaatccccgcata < 1:4094687‑M1/35‑15 (MQ=255) aaTATCATTGCCGGTTGGCGAgtaatccccgcata < 1:4052082‑M1/35‑15 (MQ=255) aaTATCATTGCCGGTTGGCGAgtaatccccgcata > 1:1035902‑M1/1‑21 (MQ=255) atatCATTGCCGGTTGGCGAgtaatccccgcatat < 1:1691354‑M1/35‑16 (MQ=255) atatCATTGCCGGTTGGCGAgtaatccccgcatat > 1:3820237‑M1/1‑20 (MQ=255) atatCATTGCCGGTTGGCGAgtaatccccgcatat > 1:181249‑M1/1‑20 (MQ=255) tatCATTGCCGGTTGGCGAgtaatccccgcatatc > 1:7389666‑M1/1‑19 (MQ=255) tCATTGCCGGTTGGCGAgtaatccccgcatatccg > 1:4556919‑M1/1‑17 (MQ=255) tCATTGCCGGTTGGCGAgtaatccccgcatatccg > 1:136233‑M1/1‑17 (MQ=255) aTTGCCGGTTGGCGAgtaatccccgcatatccggt > 1:4319541‑M1/1‑15 (MQ=255) aTTGCCGGTTGGCGAgtaatccccgcatatccggt > 1:1158215‑M1/1‑15 (MQ=255) aTTGCCGGTTGGCGAgtaatccccgcatatccggt > 1:2908609‑M1/1‑15 (MQ=255) ttGCCGGTTGGCGAgtaatccccgcatatccggtt > 1:392080‑M1/1‑14 (MQ=255) ttGCCGGTTGGCGAgtaatccccgcatatccggtt > 1:5366854‑M1/1‑14 (MQ=255) tGCCGGTTGGCGAgtaatccccgcatatccggttg < 1:7896256‑M1/35‑23 (MQ=255) tGCCGGTTGGCGAgtaatccccgcatatccggttg < 1:6095780‑M1/35‑23 (MQ=255) gCCGGTTGGCGAgtaatccccgcatatccggttgt > 1:5636091‑M1/1‑12 (MQ=255) gCCGGTTGGCGAgtaatccccgcatatccggttgt < 1:2490919‑M1/35‑24 (MQ=255) gCCGGTTGGCGAgtaatccccgcatatccggttgt > 1:4930884‑M1/1‑12 (MQ=255) gCCGGTTGGCGAgtaatccccgcatatccggttgt < 1:4942331‑M1/35‑24 (MQ=255) ccGGTTGGCGAgtaatccccgcatatccggttgtc > 1:5484162‑M1/1‑11 (MQ=255) cGGTTGGCGAgtaatccccgcatatccggttgtca < 1:5418454‑M1/35‑26 (MQ=255) gTTGGCGAgtaatccccgcatatccggttgtcagg > 1:2341117‑M1/1‑8 (MQ=255) gTTGGCGAgtaatccccgcatatccggttgtcagg > 1:6579088‑M1/1‑8 (MQ=255) ttGGCGAgtaatccccgcatatccggttgtcaggt > 1:5422532‑M1/1‑7 (MQ=255) ttGGCGAgtaatccccgcatatccggttgtcaggt > 1:6899348‑M1/1‑7 (MQ=255) ttGGCGAgtaatccccgcatatccggttgtcaggt > 1:496928‑M1/1‑7 (MQ=255) ggCGAgtaatccccgcatatccggttgtcaggtca < 1:4874376‑M1/35‑31 (MQ=255) gCGAgtaatccccgcatatccggttgtcaggtcag < 1:4433599‑M1/35‑32 (MQ=255) gCGAgtaatccccgcatatccggttgtcaggtcag > 1:1762279‑M1/1‑4 (MQ=255) gCGAgtaatccccgcatatccggttgtcaggtcag < 1:1788613‑M1/35‑32 (MQ=255) cGAgtaatccccgcatatccggttgtcaggtcagg > 1:7083033‑M1/1‑3 (MQ=255) cGAgtaatccccgcatatccggttgtcaggtcagg > 1:2820534‑M1/1‑3 (MQ=255) cGAgtaatccccgcatatccggttgtcaggtcagg > 1:2820496‑M1/1‑3 (MQ=255) gAgtaatccccgcatatccggttgtcaggtcagga < 1:1367221‑M1/35‑34 (MQ=255) agtaatccccgcatatccggttgtcaggtcaggat > 1:4781125‑M1/1‑1 (MQ=255) | CCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATC > NC_000913/603433‑603500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |