| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 116 [0] | [0] 116 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 106 (1.510) | 40/66 | 0.0 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
Only 100 of 116 total aligned reads displayed.
TGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765172‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCA > NC_000913/770613‑770646 TGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:446875/35‑1TGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:3589633/35‑1TGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:6877955/35‑1TGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:1160616/35‑1TGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:120883/1‑35TGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:1702358/35‑1 GCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAT < 1:7270790/35‑1 GCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAT < 1:6321924/35‑1 GCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG < 1:3717129/35‑1 GCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG < 1:3473930/35‑1 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC > 1:6225796/1‑35 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC > 1:336580/1‑35 TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCA > 1:7612024/1‑35 ATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAA > 1:2746037/1‑35 ATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAA > 1:5754177/1‑35 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT > 1:2778203/1‑35 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT > 1:6921941/1‑35 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT > 1:1973153/1‑35 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT < 1:7436182/35‑1 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT < 1:1766852/35‑1 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT > 1:1713200/1‑35 CAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC < 1:6648588/35‑1 CAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC > 1:2035280/1‑35 CAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC < 1:2193595/35‑1 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA < 1:2033380/35‑1 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA > 1:7343822/1‑35 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA > 1:144720/1‑35 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAA < 1:6077679/35‑1 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAA > 1:5329927/1‑35 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA < 1:7361668/35‑1 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA > 1:3375584/1‑35 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA < 1:5131863/35‑1 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC < 1:585308/35‑1 aTTATAGTCATCGGTATTATAGCAATCAAACCGAA > 1:5173713/2‑35 aTTATAGTCATCGGTATTATAGCAATCAAACCGAA > 1:621554/2‑35 aTTATAGTCATCGGTATTATAGCAATCAAACCGAA > 1:3173663/2‑35 TTATAGTCATCGGTATTATAGCAATCAAACCGAAG > 1:6469297/1‑35 TTATAGTCATCGGTATTATAGCAATCAAACCGAAG > 1:1571083/1‑35 TTATAGTCATCGGTATTATAGCAATCAAACCGAAG > 1:6679387/1‑35 TTATAGTCATCGGTATTATAGCAATCAAACCGAAG < 1:7598624/35‑1 TATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:1921498/1‑35 TATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:4599949/1‑35 TATAGTCATCGGTATTATAGCAATCAAACCGAAGC < 1:3901182/35‑1 TATAGTCATCGGTATTATAGCAATCAAACCGAAGC < 1:279033/35‑1 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCC > 1:5886511/1‑35 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCC > 1:4916000/1‑35 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCC > 1:4793703/1‑35 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCC > 1:2010278/1‑35 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCC > 1:1946166/1‑35 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCC > 1:1577379/1‑35 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCC > 1:1494425/1‑35 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCC > 1:1031616/1‑35 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCC > 1:1031573/1‑35 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:365543/1‑35 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:312510/1‑35 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCA < 1:2773651/35‑1 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:2012087/1‑35 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:5034949/1‑35 AGTCATCGGTATTATAGCAATCAAACCGAAGCCAC < 1:4409372/35‑1 AGTCATCGGTATTATAGCAATCAAACCGAAGCCAC < 1:113386/35‑1 GTCATCGGTATTATAGCAATCAAACCGAAGCCACA < 1:844995/35‑1 GTCATCGGTATTATAGCAATCAAACCGAAGCCACA > 1:5989580/1‑35 GTCATCGGTATTATAGCAATCAAACCGAAGCCACA < 1:4042204/35‑1 GTCATCGGTATTATAGCAATCAAACCGAAGCCACA < 1:1849736/35‑1 GTCATCGGTATTATAGCAATCAAACCGAAGCCACA < 1:4535377/35‑1 GTCATCGGTATTATAGCAATCAAACCGAAGCCACA > 1:7713182/1‑35 CATCGGTATTATAGCAATCAAACCGAAGCCACATA < 1:4605204/35‑1 CATCGGTATTATAGCAATCAAACCGAAGCCACATA < 1:3298779/35‑1 ATCGGTATTATAGCAATCAAACCGAAGCCACATAT > 1:3855302/1‑35 ATCGGTATTATAGCAATCAAACCGAAGCCACATAT < 1:3143424/35‑1 ATCGGTATTATAGCAATCAAACCGAAGCCACATAT > 1:6916001/1‑35 ATCGGTATTATAGCAATCAAACCGAAGCCACATAT > 1:6235634/1‑35 ATCGGTATTATAGCAATCAAACCGAAGCCACATAT > 1:3774553/1‑35 ATCGGTATTATAGCAATCAAACCGAAGCCACATAT < 1:611974/35‑1 ATCGGTATTATAGCAATCAAACCGAAGCCACATAT < 1:4538180/35‑1 ATCGGTATTATAGCAATCAAACCGAAGCCACATAT < 1:4930228/35‑1 ATCGGTATTATAGCAATCAAACCGAAGCCACATAT > 1:109467/1‑35 TCGGTATTATAGCAATCAAACCGAAGCCACATATG < 1:1985080/35‑1 TCGGTATTATAGCAATCAAACCGAAGCCACATATG > 1:3233789/1‑35 TCGGTATTATAGCAATCAAACCGAAGCCACATATG > 1:5473352/1‑35 CGGTATTATAGCAATCAAACCGAAGCCACATATGC > 1:4821488/1‑35 CGGTATTATAGCAATCAAACCGAAGCCACATATGC > 1:2760860/1‑35 GTATTATAGCAATCAAACCGAAGCCACATATGCGC > 1:2475027/1‑35 GTATTATAGCAATCAAACCGAAGCCACATATGCGC > 1:7480251/1‑35 GTATTATAGCAATCAAACCGAAGCCACATATGCGC > 1:5349899/1‑35 TATTATAGCAATCAAACCGAAGCCACATATGCGCG > 1:4679020/1‑35 TATTATAGCAATCAAACCGAAGCCACATATGCGCG > 1:792906/1‑35 TATTATAGCAATCAAACCGAAGCCACATATGCGCG > 1:3998804/1‑35 TTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:635034/1‑35 TTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:6343565/1‑35 TTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:6974256/1‑35 TTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:3204514/1‑35 TTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:7435733/1‑35 TTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:1011927/1‑35 TTATAGCAATCAAACCGAAGCCACATATGCGCGGC < 1:4412853/35‑1 TATAGCAATCAAACCGAAGCCACATATGCGCGGCC > 1:3004106/1‑35 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCA > 1:7388102/1‑35 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCA > 1:4546770/1‑35 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCA < 1:2158568/35‑1 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCA < 1:3109995/35‑1 TGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765172‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCA > NC_000913/770613‑770646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |