| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 116 [0] | [0] 116 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 106 (1.510) | 40/66 | 0.0 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
Only 100 of 116 total aligned reads displayed.
TGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCAT > NC_000913/765172‑765241 | tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:446875‑M1/35‑1 (MQ=255)tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:3589633‑M1/35‑1 (MQ=255)tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:6877955‑M1/35‑1 (MQ=255)tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:1160616‑M1/35‑1 (MQ=255)tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:120883‑M1/1‑35 (MQ=255)tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:1702358‑M1/35‑1 (MQ=255) gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAt < 1:7270790‑M1/35‑2 (MQ=255) gcgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAt < 1:6321924‑M1/35‑2 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag < 1:3717129‑M1/35‑4 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag < 1:3473930‑M1/35‑4 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc > 1:6225796‑M1/1‑31 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc > 1:336580‑M1/1‑31 (MQ=255) tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca > 1:7612024‑M1/1‑30 (MQ=255) aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:2746037‑M1/1‑29 (MQ=255) aTCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:5754177‑M1/1‑29 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:2778203‑M1/1‑28 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:6921941‑M1/1‑28 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:1973153‑M1/1‑28 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat < 1:7436182‑M1/35‑8 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat < 1:1766852‑M1/35‑8 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:1713200‑M1/1‑28 (MQ=255) cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 1:6648588‑M1/35‑9 (MQ=255) cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc > 1:2035280‑M1/1‑27 (MQ=255) cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc < 1:2193595‑M1/35‑9 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 1:2033380‑M1/35‑10 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca > 1:7343822‑M1/1‑26 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca > 1:144720‑M1/1‑26 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaa < 1:6077679‑M1/35‑11 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaa > 1:5329927‑M1/1‑25 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa < 1:7361668‑M1/35‑12 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa > 1:3375584‑M1/1‑24 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa < 1:5131863‑M1/35‑12 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac < 1:585308‑M1/35‑13 (MQ=255) attaTAGTCATCGGTATTAtagcaatcaaaccgaa > 1:5173713‑M1/2‑19 (MQ=255) attaTAGTCATCGGTATTAtagcaatcaaaccgaa > 1:621554‑M1/2‑19 (MQ=255) attaTAGTCATCGGTATTAtagcaatcaaaccgaa > 1:3173663‑M1/2‑19 (MQ=255) ttATAGTCATCGGTATTAtagcaatcaaaccgaag > 1:6469297‑M1/1‑18 (MQ=255) ttATAGTCATCGGTATTAtagcaatcaaaccgaag > 1:1571083‑M1/1‑18 (MQ=255) ttATAGTCATCGGTATTAtagcaatcaaaccgaag > 1:6679387‑M1/1‑18 (MQ=255) ttATAGTCATCGGTATTAtagcaatcaaaccgaag < 1:7598624‑M1/35‑18 (MQ=255) tataGTCATCGGTATTAtagcaatcaaaccgaagc > 1:1921498‑M1/1‑17 (MQ=255) tataGTCATCGGTATTAtagcaatcaaaccgaagc > 1:4599949‑M1/1‑17 (MQ=255) tataGTCATCGGTATTAtagcaatcaaaccgaagc < 1:3901182‑M1/35‑19 (MQ=255) tataGTCATCGGTATTAtagcaatcaaaccgaagc < 1:279033‑M1/35‑19 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagcc > 1:5886511‑M1/1‑16 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagcc > 1:4916000‑M1/1‑16 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagcc > 1:4793703‑M1/1‑16 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagcc > 1:2010278‑M1/1‑16 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagcc > 1:1946166‑M1/1‑16 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagcc > 1:1577379‑M1/1‑16 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagcc > 1:1494425‑M1/1‑16 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagcc > 1:1031616‑M1/1‑16 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagcc > 1:1031573‑M1/1‑16 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:365543‑M1/1‑15 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:312510‑M1/1‑15 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagcca < 1:2773651‑M1/35‑21 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:2012087‑M1/1‑15 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:5034949‑M1/1‑15 (MQ=255) aGTCATCGGTATTAtagcaatcaaaccgaagccac < 1:4409372‑M1/35‑22 (MQ=255) aGTCATCGGTATTAtagcaatcaaaccgaagccac < 1:113386‑M1/35‑22 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccaca < 1:844995‑M1/35‑23 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccaca > 1:5989580‑M1/1‑13 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccaca < 1:4042204‑M1/35‑23 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccaca < 1:1849736‑M1/35‑23 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccaca < 1:4535377‑M1/35‑23 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccaca > 1:7713182‑M1/1‑13 (MQ=255) cATCGGTATTAtagcaatcaaaccgaagccacata < 1:4605204‑M1/35‑25 (MQ=255) cATCGGTATTAtagcaatcaaaccgaagccacata < 1:3298779‑M1/35‑25 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatat > 1:3855302‑M1/1‑10 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatat < 1:3143424‑M1/35‑26 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatat > 1:6916001‑M1/1‑10 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatat > 1:6235634‑M1/1‑10 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatat > 1:3774553‑M1/1‑10 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatat < 1:611974‑M1/35‑26 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatat < 1:4538180‑M1/35‑26 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatat < 1:4930228‑M1/35‑26 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatat > 1:109467‑M1/1‑10 (MQ=255) tCGGTATTAtagcaatcaaaccgaagccacatatg < 1:1985080‑M1/35‑27 (MQ=255) tCGGTATTAtagcaatcaaaccgaagccacatatg > 1:3233789‑M1/1‑9 (MQ=255) tCGGTATTAtagcaatcaaaccgaagccacatatg > 1:5473352‑M1/1‑9 (MQ=255) cGGTATTAtagcaatcaaaccgaagccacatatgc > 1:4821488‑M1/1‑8 (MQ=255) cGGTATTAtagcaatcaaaccgaagccacatatgc > 1:2760860‑M1/1‑8 (MQ=255) gTATTAtagcaatcaaaccgaagccacatatgcgc > 1:2475027‑M1/1‑6 (MQ=255) gTATTAtagcaatcaaaccgaagccacatatgcgc > 1:7480251‑M1/1‑6 (MQ=255) gTATTAtagcaatcaaaccgaagccacatatgcgc > 1:5349899‑M1/1‑6 (MQ=255) tattatagcaatcaaaccgaagccacatatgcgcg > 1:4679020‑M1/1‑5 (MQ=255) tattatagcaatcaaaccgaagccacatatgcgcg > 1:792906‑M1/1‑5 (MQ=255) tattatagcaatcaaaccgaagccacatatgcgcg > 1:3998804‑M1/1‑5 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggc > 1:635034‑M1/1‑3 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggc > 1:6343565‑M1/1‑3 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggc > 1:6974256‑M1/1‑3 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggc > 1:3204514‑M1/1‑3 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggc > 1:7435733‑M1/1‑3 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggc > 1:1011927‑M1/1‑3 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggc < 1:4412853‑M1/35‑33 (MQ=255) tatagcaatcaaaccgaagccacatatgcgcggcc > 1:3004106‑M1/1‑2 (MQ=255) atagcaatcaaaccgaagccacatatgcgcggcca > 1:7388102‑M1/1‑1 (MQ=255) atagcaatcaaaccgaagccacatatgcgcggcca > 1:4546770‑M1/1‑1 (MQ=255) atagcaatcaaaccgaagccacatatgcgcggcca < 1:2158568‑M1/35‑35 (MQ=255) atagcaatcaaaccgaagccacatatgcgcggcca < 1:3109995‑M1/35‑35 (MQ=255) | TGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCAT > NC_000913/765172‑765241 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |