Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 765,208 Δ5,405 bp [mngR]–mngB [mngR], mngA, mngB

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 765208 770612 5405 116 [0] [0] 116 [mngR]–mngB [mngR],mngA,mngB

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 7652070 (0.000)106 (1.510) 40/66 0.0 100% coding (669/723 nt) mngR DNA‑binding transcriptional repressor MngR
?NC_000913 770613 = 0 (0.000)intergenic (+2/‑845) mngB/cydA alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I

Only 100 of 116 total aligned reads displayed.

CAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAG  >  NC_000913/770579‑770647
                                  |                                  
gcgctatcagggtaaattatagtcatcggtattat                                    <  1:7270790‑M2/1‑1 (MQ=255)
gcgctatcagggtaaattatagtcatcggtattat                                    <  1:6321924‑M2/1‑1 (MQ=255)
 cgctatcagggtaaattatagtcatcggtattata                                   <  1:3241812‑M2/2‑1 (MQ=255)
  gctatcagggtaaattatagtcatcggtattaTAg                                  <  1:3717129‑M2/3‑1 (MQ=255)
  gctatcagggtaaattatagtcatcggtattaTAg                                  <  1:3473930‑M2/3‑1 (MQ=255)
   ctatcagggtaaattatagtcatcggtattaTAGc                                 >  1:336580‑M2/32‑35 (MQ=255)
   ctatcagggtaaattatagtcatcggtattaTAGc                                 >  1:6225796‑M2/32‑35 (MQ=255)
    tatcagggtaaattatagtcatcggtattaTAGCa                                >  1:7612024‑M2/31‑35 (MQ=255)
     atcagggtaaattatagtcatcggtattaTAGCaa                               >  1:5754177‑M2/30‑35 (MQ=255)
      tcagggtaaattatagtcatcggtattaTAGCAAt                              >  1:2778203‑M2/29‑35 (MQ=255)
      tcagggtaaattatagtcatcggtattaTAGCAAt                              >  1:6921941‑M2/29‑35 (MQ=255)
      tcagggtaaattatagtcatcggtattaTAGCAAt                              <  1:7436182‑M2/7‑1 (MQ=255)
      tcagggtaaattatagtcatcggtattaTAGCAAt                              >  1:1973153‑M2/29‑35 (MQ=255)
      tcagggtaaattatagtcatcggtattaTAGCAAt                              >  1:6620904‑M2/29‑35 (MQ=255)
      tcagggtaaattatagtcatcggtattaTAGCAAt                              <  1:1766852‑M2/7‑1 (MQ=255)
      tcagggtaaattatagtcatcggtattaTAGCAAt                              >  1:1713200‑M2/29‑35 (MQ=255)
       cagggtaaattatagtcatcggtattaTAGCAATc                             <  1:6648588‑M2/8‑1 (MQ=255)
       cagggtaaattatagtcatcggtattaTAGCAATc                             >  1:2035280‑M2/28‑35 (MQ=255)
       cagggtaaattatagtcatcggtattaTAGCAATc                             <  1:2193595‑M2/8‑1 (MQ=255)
        agggtaaattatagtcatcggtattaTAGCAATCa                            <  1:2033380‑M2/9‑1 (MQ=255)
        agggtaaattatagtcatcggtattaTAGCAATCa                            >  1:7343822‑M2/27‑35 (MQ=255)
         gggtaaattatagtcatcggtattaTAGCAATCaa                           >  1:5329927‑M2/26‑35 (MQ=255)
         gggtaaattatagtcatcggtattaTAGCAATCaa                           <  1:6077679‑M2/10‑1 (MQ=255)
         gggtaaattatagtcatcggtattaTAGCAATCaa                           <  1:4600787‑M2/10‑1 (MQ=255)
          ggtaaattatagtcatcggtattaTAGCAATCaaa                          >  1:3064625‑M2/25‑35 (MQ=255)
          ggtaaattatagtcatcggtattaTAGCAATCaaa                          >  1:3375584‑M2/25‑35 (MQ=255)
          ggtaaattatagtcatcggtattaTAGCAATCaaa                          <  1:6152103‑M2/11‑1 (MQ=255)
          ggtaaattatagtcatcggtattaTAGCAATCaaa                          <  1:7361668‑M2/11‑1 (MQ=255)
          ggtaaattatagtcatcggtattaTAGCAATCaaa                          <  1:5131863‑M2/11‑1 (MQ=255)
           gtaaattatagtcatcggtattaTAGCAATCAAAc                         <  1:585308‑M2/12‑1 (MQ=255)
           gtaaattatagtcatcggtattaTAGCAATCAAAc                         <  1:1985304‑M2/12‑1 (MQ=255)
               attatagtcatcggtattaTAGCAATCAAACCGaa                     >  1:621554‑M2/20‑35 (MQ=255)
               attatagtcatcggtattaTAGCAATCAAACCGaa                     >  1:3173663‑M2/20‑35 (MQ=255)
               attatagtcatcggtattaTAGCAATCAAACCGaa                     >  1:5173713‑M2/20‑35 (MQ=255)
                ttatagtcatcggtattaTAGCAATCAAACCGAAg                    >  1:6679387‑M2/19‑35 (MQ=255)
                ttatagtcatcggtattaTAGCAATCAAACCGAAg                    >  1:1571083‑M2/19‑35 (MQ=255)
                ttatagtcatcggtattaTAGCAATCAAACCGAAg                    <  1:7598624‑M2/17‑1 (MQ=255)
                 tatagtcatcggtattaTAGCAATCAAACCGAAGc                   <  1:279033‑M2/18‑1 (MQ=255)
                 tatagtcatcggtattaTAGCAATCAAACCGAAGc                   <  1:3901182‑M2/18‑1 (MQ=255)
                 tatagtcatcggtattaTAGCAATCAAACCGAAGc                   >  1:4599949‑M2/18‑35 (MQ=255)
                 tatagtcatcggtattaTAGCAATCAAACCGAAGc                   <  1:175630‑M2/18‑1 (MQ=255)
                 tatagtcatcggtattaTAGCAATCAAACCGAAGc                   >  1:1921498‑M2/18‑35 (MQ=255)
                  atagtcatcggtattaTAGCAATCAAACCGAAGcc                  >  1:5886511‑M2/17‑35 (MQ=255)
                  atagtcatcggtattaTAGCAATCAAACCGAAGcc                  >  1:4793703‑M2/17‑35 (MQ=255)
                  atagtcatcggtattaTAGCAATCAAACCGAAGcc                  >  1:4916000‑M2/17‑35 (MQ=255)
                  atagtcatcggtattaTAGCAATCAAACCGAAGcc                  >  1:2010278‑M2/17‑35 (MQ=255)
                  atagtcatcggtattaTAGCAATCAAACCGAAGcc                  >  1:1946166‑M2/17‑35 (MQ=255)
                  atagtcatcggtattaTAGCAATCAAACCGAAGcc                  >  1:1577379‑M2/17‑35 (MQ=255)
                  atagtcatcggtattaTAGCAATCAAACCGAAGcc                  >  1:1494425‑M2/17‑35 (MQ=255)
                  atagtcatcggtattaTAGCAATCAAACCGAAGcc                  >  1:1031616‑M2/17‑35 (MQ=255)
                  atagtcatcggtattaTAGCAATCAAACCGAAGcc                  >  1:1031573‑M2/17‑35 (MQ=255)
                   tagtcatcggtattaTAGCAATCAAACCGAAGCca                 >  1:365543‑M2/16‑35 (MQ=255)
                   tagtcatcggtattaTAGCAATCAAACCGAAGCca                 >  1:312510‑M2/16‑35 (MQ=255)
                   tagtcatcggtattaTAGCAATCAAACCGAAGCca                 <  1:2773651‑M2/20‑1 (MQ=255)
                   tagtcatcggtattaTAGCAATCAAACCGAAGCca                 >  1:5034949‑M2/16‑35 (MQ=255)
                    agtcatcggtattaTAGCAATCAAACCGAAGCcac                <  1:4409372‑M2/21‑1 (MQ=255)
                    agtcatcggtattaTAGCAATCAAACCGAAGCcac                <  1:113386‑M2/21‑1 (MQ=255)
                     gtcatcggtattaTAGCAATCAAACCGAAGCcaca               >  1:5989580‑M2/14‑35 (MQ=255)
                     gtcatcggtattaTAGCAATCAAACCGAAGCcaca               >  1:7713182‑M2/14‑35 (MQ=255)
                     gtcatcggtattaTAGCAATCAAACCGAAGCcaca               <  1:844995‑M2/22‑1 (MQ=255)
                     gtcatcggtattaTAGCAATCAAACCGAAGCcaca               >  1:2304849‑M2/14‑35 (MQ=255)
                     gtcatcggtattaTAGCAATCAAACCGAAGCcaca               <  1:4042204‑M2/22‑1 (MQ=255)
                     gtcatcggtattaTAGCAATCAAACCGAAGCcaca               <  1:4535377‑M2/22‑1 (MQ=255)
                        atcggtattaTAGCAATCAAACCGAAGCCACatat            >  1:6916001‑M2/11‑35 (MQ=255)
                        atcggtattaTAGCAATCAAACCGAAGCCACatat            <  1:3143424‑M2/25‑1 (MQ=255)
                        atcggtattaTAGCAATCAAACCGAAGCCACatat            >  1:6235634‑M2/11‑35 (MQ=255)
                        atcggtattaTAGCAATCAAACCGAAGCCACatat            >  1:3855302‑M2/11‑35 (MQ=255)
                        atcggtattaTAGCAATCAAACCGAAGCCACatat            >  1:109467‑M2/11‑35 (MQ=255)
                        atcggtattaTAGCAATCAAACCGAAGCCACatat            <  1:4538180‑M2/25‑1 (MQ=255)
                        atcggtattaTAGCAATCAAACCGAAGCCACatat            <  1:4930228‑M2/25‑1 (MQ=255)
                         tcggtattaTAGCAATCAAACCGAAGCCACATATg           <  1:1985080‑M2/26‑1 (MQ=255)
                         tcggtattaTAGCAATCAAACCGAAGCCACATATg           >  1:5473352‑M2/10‑35 (MQ=255)
                         tcggtattaTAGCAATCAAACCGAAGCCACATATg           >  1:3233789‑M2/10‑35 (MQ=255)
                          cggtattaTAGCAATCAAACCGAAGCCACATATgc          >  1:4821488‑M2/9‑35 (MQ=255)
                          cggtattaTAGCAATCAAACCGAAGCCACATATgc          >  1:2760860‑M2/9‑35 (MQ=255)
                            gtattaTAGCAATCAAACCGAAGCCACATATgcgc        >  1:5349899‑M2/7‑35 (MQ=255)
                            gtattaTAGCAATCAAACCGAAGCCACATATgcgc        >  1:7480251‑M2/7‑35 (MQ=255)
                            gtattaTAGCAATCAAACCGAAGCCACATATgcgc        >  1:2475027‑M2/7‑35 (MQ=255)
                             tattaTAGCAATCAAACCGAAGCCACATATGcgcg       >  1:3998804‑M2/6‑35 (MQ=255)
                             tattaTAGCAATCAAACCGAAGCCACATATGcgcg       >  1:792906‑M2/6‑35 (MQ=255)
                             tattaTAGCAATCAAACCGAAGCCACATATGcgcg       >  1:4679020‑M2/6‑35 (MQ=255)
                              attaTAGCAATCAAACCGAAGCCACATATGCGCgg      >  1:1304461‑M2/5‑35 (MQ=255)
                               ttaTAGCAATCAAACCGAAGCCACATATGCGCGGc     >  1:1011927‑M2/4‑35 (MQ=255)
                               ttaTAGCAATCAAACCGAAGCCACATATGCGCGGc     >  1:6974256‑M2/4‑35 (MQ=255)
                               ttaTAGCAATCAAACCGAAGCCACATATGCGCGGc     >  1:7435733‑M2/4‑35 (MQ=255)
                               ttaTAGCAATCAAACCGAAGCCACATATGCGCGGc     >  1:635034‑M2/4‑35 (MQ=255)
                               ttaTAGCAATCAAACCGAAGCCACATATGCGCGGc     >  1:6343565‑M2/4‑35 (MQ=255)
                               ttaTAGCAATCAAACCGAAGCCACATATGCGCGGc     >  1:3204514‑M2/4‑35 (MQ=255)
                               ttaTAGCAATCAAACCGAAGCCACATATGCGCGGc     >  1:3696553‑M2/4‑35 (MQ=255)
                                taTAGCAATCAAACCGAAGCCACATATGCGCGGcc    >  1:3004106‑M2/3‑35 (MQ=255)
                                taTAGCAATCAAACCGAAGCCACATATGCGCGGcc    >  1:4192437‑M2/3‑35 (MQ=255)
                                 aTAGCAATCAAACCGAAGCCACATATGCGCGGCCa   <  1:2158568‑M2/34‑1 (MQ=255)
                                 aTAGCAATCAAACCGAAGCCACATATGCGCGGCCa   >  1:7388102‑M2/2‑35 (MQ=255)
                                 aTAGCAATCAAACCGAAGCCACATATGCGCGGCCa   >  1:4546770‑M2/2‑35 (MQ=255)
                                  tAGCAATCAAACCGAAGCCACATATGCGCGGCCAg  >  1:3090476/1‑35 (MQ=255)
                                  tAGCAATCAAACCGAAGCCACATATGCGCGGCCAg  >  1:6058788/1‑35 (MQ=255)
                                  tAGCAATCAAACCGAAGCCACATATGCGCGGCCAg  >  1:1397257/1‑35 (MQ=255)
                                  tAGCAATCAAACCGAAGCCACATATGCGCGGCCAg  >  1:4526706/1‑35 (MQ=255)
                                  tAGCAATCAAACCGAAGCCACATATGCGCGGCCAg  >  1:4529188/1‑35 (MQ=255)
                                  tAGCAATCAAACCGAAGCCACATATGCGCGGCCAg  <  1:4971074/35‑1 (MQ=255)
                                  |                                  
CAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAG  >  NC_000913/770579‑770647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑