| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 93 [0] | [0] 94 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 92 (1.270) | 43/68 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819742‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGC > NC_000913/882753‑882786 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT < 1:6253048/35‑1TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT > 1:4704816/1‑35TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT < 1:5105691/35‑1TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT < 1:6997168/35‑1 GGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT < 1:6768843/35‑1 GGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT > 1:7018717/1‑35 GGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT < 1:2819607/35‑1 GGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT > 1:5182885/1‑35 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG > 1:1332660/1‑35 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG > 1:2512836/1‑35 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG > 1:1707069/1‑35 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 1:2358764/35‑1 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG > 1:5504076/1‑35 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGA < 1:2643013/35‑1 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGA < 1:401578/35‑1 AGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAA < 1:3580831/35‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG > 1:7497292/1‑35 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG > 1:4003002/1‑35 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG < 1:6132169/35‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG > 1:690720/1‑35 GTTTTTTGTTAGCCGGATAAGGCACCGCTCTGAAG > 1:7674259/1‑35 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:221026/1‑35 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC < 1:2505120/35‑1 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC < 1:5409551/35‑1 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC < 1:1415184/35‑1 TTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG > 1:7767547/1‑35 TTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG > 1:6197292/1‑35 TTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG > 1:7365234/1‑35 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGC > 1:7357008/1‑35 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC < 1:5395875/35‑1 GTTAGCCGGATAAGGCCCCGCTTTGAAGCGAGCCG < 1:1891808/35‑1 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGC > 1:7778319/1‑35 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGC > 1:1466047/1‑35 TAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:4973527/1‑35 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC > 1:3313275/1‑35 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC > 1:7531758/1‑35 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC > 1:692222/1‑35 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC < 1:4981929/35‑1 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC < 1:4323483/35‑1 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC > 1:4234095/1‑35 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCA > 1:2993819/1‑35 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA > 1:6458724/1‑35 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA < 1:453595/35‑1 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA < 1:30660/35‑1 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA > 1:5019701/1‑35 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA > 1:133323/1‑35 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA < 1:2282205/35‑1 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATA > 1:7155105/1‑35 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:641992/1‑35 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:7071422/1‑35 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:4622682/1‑35 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC < 1:1300906/35‑1 ATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACT > 1:678861/1‑35 ATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACT > 1:5362218/1‑35 ATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACT < 1:4932707/35‑1 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:536287/1‑35 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:5425889/1‑35 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:2120932/1‑35 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:7510175/1‑35 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA < 1:1219263/35‑1 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA < 1:4435598/35‑1 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:6456563/1‑35 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:4312824/1‑35 AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTAC > 1:7541980/1‑35 AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTAC < 1:5683113/35‑1 AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTAC > 1:3502959/1‑35 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA > 1:698122/1‑35 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA < 1:7425232/35‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA < 1:7076679/35‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA > 1:118295/1‑35 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA > 1:6319383/1‑35 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA > 1:4538830/1‑35 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA > 1:4342847/1‑35 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA > 1:4053912/1‑35 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA > 1:2986230/1‑35 GCACCGCTTTGAAGCGAGCCGCTCAATACTACACT > 1:1090651/1‑35 GCACCGCTTTGAAGCGAGCCGCTCAATACTACACT > 1:7746153/1‑35 GCACCGCTTTGAAGCGAGCCGCTCAATACTACACT < 1:645982/35‑1 GCACCGCTTTGAAGCGAGCCGCTCAATACTACACT < 1:2908005/35‑1 CACCGCTTTGAAGCGAGCCGCTCAATACTACACTT < 1:2288387/35‑1 ACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT < 1:6150051/35‑1 ACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT < 1:591740/35‑1 ACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT < 1:1886196/35‑1 CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT < 1:3403126/35‑1 CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT < 1:2098086/35‑1 CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT < 1:5504452/35‑1 CGCTTTGAAGCGAGCCGCTCAATACTACACTTTTT < 1:7875696/35‑1 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTA > 1:2544932/1‑35 CTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG < 1:3713852/35‑1 CTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG < 1:2004539/35‑1 CTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG < 1:5229162/35‑1 TTTGAAGCGAGCCGCTCAATACTACACTTTTTAGC < 1:7177441/35‑1 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819742‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGC > NC_000913/882753‑882786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |