| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 93 [0] | [0] 94 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 92 (1.270) | 43/68 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
CGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > NC_000913/882719‑882787 | tggtagttttttgttagccggataaggcaccgctt < 1:6253048‑M2/1‑1 (MQ=255)tggtagttttttgttagccggataaggcaccgctt > 1:4704816‑M2/35‑35 (MQ=255)tggtagttttttgttagccggataaggcaccgctt < 1:5105691‑M2/1‑1 (MQ=255)tggtagttttttgttagccggataaggcaccgctt < 1:6997168‑M2/1‑1 (MQ=255) ggtagttttttgttagccggataaggcaccgcttt > 1:7018717‑M2/34‑35 (MQ=255) ggtagttttttgttagccggataaggcaccgcttt < 1:6768843‑M2/2‑1 (MQ=255) ggtagttttttgttagccggataaggcaccgcttt > 1:5182885‑M2/34‑35 (MQ=255) ggtagttttttgttagccggataaggcaccgcttt < 1:2819607‑M2/2‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTg > 1:1332660‑M2/33‑35 (MQ=255) gtagttttttgttagccggataaggcaccgctTTg > 1:1707069‑M2/33‑35 (MQ=255) gtagttttttgttagccggataaggcaccgctTTg > 1:5504076‑M2/33‑35 (MQ=255) gtagttttttgttagccggataaggcaccgctTTg > 1:2512836‑M2/33‑35 (MQ=255) gtagttttttgttagccggataaggcaccgctTTg < 1:2358764‑M2/3‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGa < 1:2643013‑M2/4‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGa < 1:401578‑M2/4‑1 (MQ=255) agttttttgttagccggataaggcaccgctTTGaa < 1:3580831‑M2/5‑1 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAg < 1:6132169‑M2/6‑1 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAg > 1:690720‑M2/30‑35 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAg > 1:7497292‑M2/30‑35 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAg > 1:4003002‑M2/30‑35 (MQ=255) gttttttgttagccggataaggcaccgctCTGAAg > 1:7674259‑M2/30‑35 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGc > 1:221026‑M2/29‑35 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGc < 1:2505120‑M2/7‑1 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGc < 1:1415184‑M2/7‑1 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGc < 1:5409551‑M2/7‑1 (MQ=255) tttgttagccggataaggcaccgctTTGAAGCGAg > 1:7767547‑M2/26‑35 (MQ=255) tttgttagccggataaggcaccgctTTGAAGCGAg > 1:7365234‑M2/26‑35 (MQ=255) tttgttagccggataaggcaccgctTTGAAGCGAg > 1:6197292‑M2/26‑35 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGc > 1:7357008‑M2/25‑35 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGcc < 1:5395875‑M2/12‑1 (MQ=255) gttagccggataaggccccgctTTGAAGCGAGCCg < 1:1891808‑M2/13‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGc > 1:1466047‑M2/22‑35 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGc > 1:7778319‑M2/22‑35 (MQ=255) tagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:4973527‑M2/21‑35 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTc > 1:3313275‑M2/20‑35 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTc > 1:4234095‑M2/20‑35 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTc < 1:4323483‑M2/16‑1 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTc < 1:4981929‑M2/16‑1 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTc > 1:7531758‑M2/20‑35 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTc > 1:692222‑M2/20‑35 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCa > 1:2993819‑M2/19‑35 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 1:6458724‑M2/18‑35 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 1:5019701‑M2/18‑35 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCaa < 1:453595‑M2/18‑1 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 1:133323‑M2/18‑35 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCaa < 1:30660‑M2/18‑1 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCaa < 1:2282205‑M2/18‑1 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAAta > 1:7155105‑M2/16‑35 (MQ=255) gataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:7071422‑M2/15‑35 (MQ=255) gataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:641992‑M2/15‑35 (MQ=255) gataaggcaccgctTTGAAGCGAGCCGCTCAAtac < 1:1300906‑M2/21‑1 (MQ=255) gataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:4622682‑M2/15‑35 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAAtact < 1:4932707‑M2/22‑1 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAAtact > 1:5362218‑M2/14‑35 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAAtact > 1:678861‑M2/14‑35 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:5425889‑M2/13‑35 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:6456563‑M2/13‑35 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAAtacta < 1:1219263‑M2/23‑1 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:2120932‑M2/13‑35 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:7510175‑M2/13‑35 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:536287‑M2/13‑35 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:4312824‑M2/13‑35 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAAtacta < 1:4435598‑M2/23‑1 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAAtactac < 1:5683113‑M2/24‑1 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAAtactac > 1:7541980‑M2/12‑35 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAAtactac > 1:3502959‑M2/12‑35 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:698122‑M2/11‑35 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTaca < 1:7425232‑M2/25‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTaca < 1:7076679‑M2/25‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:118295‑M2/11‑35 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:6319383‑M2/11‑35 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:4538830‑M2/11‑35 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:4342847‑M2/11‑35 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:4053912‑M2/11‑35 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTaca > 1:2986230‑M2/11‑35 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACt > 1:1090651‑M2/9‑35 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACt > 1:7746153‑M2/9‑35 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACt < 1:645982‑M2/27‑1 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACt < 1:2908005‑M2/27‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACtt < 1:2288387‑M2/28‑1 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACttt < 1:6150051‑M2/29‑1 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACttt < 1:591740‑M2/29‑1 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACttt < 1:1886196‑M2/29‑1 (MQ=255) ccgctTTGAAGCGAGCCGCTCAATACTACACtttt < 1:3403126‑M2/30‑1 (MQ=255) ccgctTTGAAGCGAGCCGCTCAATACTACACtttt < 1:2098086‑M2/30‑1 (MQ=255) ccgctTTGAAGCGAGCCGCTCAATACTACACtttt < 1:5504452‑M2/30‑1 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACttttt < 1:7875696‑M2/31‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTa > 1:2544932‑M2/4‑35 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:3713852‑M2/33‑1 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:2004539‑M2/33‑1 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:5229162‑M2/33‑1 (MQ=255) tTTGAAGCGAGCCGCTCAATACTACACTTTTTAGc < 1:7177441‑M2/34‑1 (MQ=255) ttGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:3182643/1‑35 (MQ=255) ttGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:615648/1‑35 (MQ=255) | CGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > NC_000913/882719‑882787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |