| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 81 [0] | [0] 82 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 80 (1.110) | 46/68 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
TTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997834‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT > NC_000913/1004686‑1004719 TTATCATATTTACGAAGAGATCAGGATGATAACGT > 1:5178624/1‑35TTATCATATTTACGAAGAGATCAGGATGATAACGT > 1:6707527/1‑35TTATCATATTTACGAAGAGATCAGGATGATAACGT > 1:1488202/1‑35TTATCATATTTACGAAGAGATCAGGATGATAACGT < 1:6265034/35‑1 TATCATATTTACGAAGAGATCAGGATGATAACGTT < 1:5939483/35‑1 TATCATATTTACGAAGAGATCAGGATGATAACGTT > 1:4516298/1‑35 TATCATATTTACGAAGAGATCAGGATGATAACGTT < 1:5797520/35‑1 ATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:1453787/35‑1 ATCATATTTACGAAGAGATCAGGATGATAACGTTT > 1:3738476/1‑35 TCATATTTACGAAGAGATCAGGATGATAACGTTTG < 1:3707823/35‑1 TCATATTTACGAAGAGATCAGGATGATAACGTTTG < 1:2526033/35‑1 TCATATTTACGAAGAGATCAGGATGATAACGTTTG < 1:1994336/35‑1 TCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:2322131/1‑35 TCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:6479405/1‑35 CATATTTACGAAGAGATCAGGATGATAACGTTTGC > 1:4307051/1‑35 CATATTTACGAAGAGATCAGGATGATAACGTTTGC < 1:681951/35‑1 ATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:1697659/1‑35 ATATTTACGAAGAGATCAGGATGATAACGTTTGCC < 1:6968202/35‑1 TATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:2151289/1‑35 TATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:1526930/1‑35 ATTTACGAAGAGATCAGGATGATAACGTTTGCCGC < 1:834825/35‑1 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCA > 1:5283560/1‑35 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCA > 1:1661572/1‑35 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCA > 1:5828781/1‑35 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCA > 1:1561191/1‑35 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCA > 1:7714657/1‑35 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCA > 1:6531270/1‑35 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT < 1:1126289/35‑1 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 1:1018873/1‑35 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTC > 1:6526895/1‑35 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA < 1:2680466/35‑1 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA < 1:2680400/35‑1 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA > 1:6965738/1‑35 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA < 1:5113213/35‑1 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT > 1:4007531/1‑35 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT < 1:5057871/35‑1 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT > 1:5019771/1‑35 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATT > 1:6245482/1‑35 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATT > 1:6919831/1‑35 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATT < 1:2372539/35‑1 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATT < 1:1991175/35‑1 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATT < 1:1562958/35‑1 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:6769303/1‑35 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTC < 1:6970581/35‑1 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:2133825/1‑35 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:432603/1‑35 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTC < 1:4013388/35‑1 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTC < 1:7518607/35‑1 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:7259352/1‑35 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCC < 1:6538281/35‑1 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCC < 1:1519440/35‑1 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCC > 1:5642232/1‑35 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCC > 1:2290544/1‑35 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCC < 1:7853908/35‑1 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCC < 1:3360752/35‑1 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC < 1:7116624/35‑1 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC < 1:1455845/35‑1 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC > 1:5228711/1‑35 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:4564626/1‑35 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT < 1:4777309/35‑1 CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT < 1:3985102/35‑1 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT < 1:5737933/35‑1 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT < 1:4484668/35‑1 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT < 1:611415/35‑1 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG > 1:4959411/1‑35 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG < 1:917765/35‑1 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG > 1:5832316/1‑35 GATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC > 1:7144964/1‑35 GATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC > 1:2406820/1‑35 ATAACGTTTGCGGCAGGTCAATTCCCTTTTGGTCC < 1:1266525/35‑1 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:6361139/1‑35 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:5060476/1‑35 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:3811703/1‑35 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC < 1:2789542/35‑1 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCG < 1:5590862/35‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA < 1:7053016/35‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA > 1:3720740/1‑35 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA > 1:224045/1‑35 CGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAC < 1:4780375/35‑1 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT < 1:3185073/35‑1 TTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997834‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT > NC_000913/1004686‑1004719 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |