| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 81 [0] | [0] 82 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 80 (1.110) | 46/68 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
ATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTG > NC_000913/997833‑997901 | aTTATCATATTTACGAAGAGATCAGGATGATAACg > 1:6632255/1‑35 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGt > 1:5178624‑M1/1‑34 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGt > 1:6707527‑M1/1‑34 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGt > 1:1488202‑M1/1‑34 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGt < 1:6265034‑M1/35‑2 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtt < 1:5797520‑M1/35‑3 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtt > 1:4516298‑M1/1‑33 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtt < 1:5939483‑M1/35‑3 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGttt < 1:1453787‑M1/35‑4 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGttt > 1:3738476‑M1/1‑32 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttg < 1:3707823‑M1/35‑5 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttg < 1:1994336‑M1/35‑5 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:2322131‑M1/1‑31 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:6479405‑M1/1‑31 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttg < 1:2526033‑M1/35‑5 (MQ=255) cATATTTACGAAGAGATCAGGATGATAACGtttgc < 1:681951‑M1/35‑6 (MQ=255) cATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:4307051‑M1/1‑30 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgcc < 1:6968202‑M1/35‑7 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgcc > 1:1697659‑M1/1‑29 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccg > 1:1526930‑M1/1‑28 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccg > 1:2151289‑M1/1‑28 (MQ=255) atTTACGAAGAGATCAGGATGATAACGtttgccgc < 1:834825‑M1/35‑9 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgca > 1:6531270‑M1/1‑26 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgca > 1:7714657‑M1/1‑26 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgca > 1:5283560‑M1/1‑26 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgca > 1:1661572‑M1/1‑26 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgca > 1:1561191‑M1/1‑26 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgca > 1:5828781‑M1/1‑26 (MQ=255) aCGAAGAGATCAGGATGATAACGtttgccgcaggt < 1:1126289‑M1/35‑13 (MQ=255) aCGAAGAGATCAGGATGATAACGtttgccgcaggt > 1:1018873‑M1/1‑23 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtc > 1:6526895‑M1/1‑22 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaa > 1:6965738‑M1/1‑20 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaa < 1:5113213‑M1/35‑16 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaa < 1:2680400‑M1/35‑16 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaa < 1:2680466‑M1/35‑16 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaat > 1:4007531‑M1/1‑19 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaat > 1:5019771‑M1/1‑19 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaat < 1:5057871‑M1/35‑17 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaatt > 1:6919831‑M1/1‑18 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaatt > 1:6245482‑M1/1‑18 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaatt < 1:2372539‑M1/35‑18 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaatt < 1:1991175‑M1/35‑18 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaatt < 1:1562958‑M1/35‑18 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattc > 1:6769303‑M1/1‑17 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattc < 1:6970581‑M1/35‑19 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattc > 1:2133825‑M1/1‑17 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattc > 1:432603‑M1/1‑17 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattc < 1:4013388‑M1/35‑19 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattc < 1:7518607‑M1/35‑19 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattc > 1:7259352‑M1/1‑17 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcc < 1:1519440‑M1/35‑20 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcc < 1:6538281‑M1/35‑20 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcc > 1:5642232‑M1/1‑16 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcc > 1:2290544‑M1/1‑16 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcc < 1:7853908‑M1/35‑20 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcc < 1:3360752‑M1/35‑20 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattccc < 1:7116624‑M1/35‑21 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattccc < 1:1455845‑M1/35‑21 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattccc > 1:5228711‑M1/1‑15 (MQ=255) tCAGGATGATAACGtttgccgcaggtcaattccct > 1:4564626‑M1/1‑14 (MQ=255) tCAGGATGATAACGtttgccgcaggtcaattccct < 1:4777309‑M1/35‑22 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattccctt < 1:3985102‑M1/35‑23 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttt < 1:5737933‑M1/35‑24 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttt < 1:4484668‑M1/35‑24 (MQ=255) ggATGATAACGtttgccgcaggtcaattccctttt < 1:611415‑M1/35‑25 (MQ=255) gatgatAACGtttgccgcaggtcaattcccttttg > 1:4959411‑M1/1‑10 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttgg < 1:917765‑M1/35‑27 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttgg > 1:5832316‑M1/1‑9 (MQ=255) gatAACGtttgccgcaggtcaattcccttttggtc > 1:7144964‑M1/1‑7 (MQ=255) gatAACGtttgccgcaggtcaattcccttttggtc > 1:2406820‑M1/1‑7 (MQ=255) atAACGtttgcggcaggtcaattcccttttggtcc < 1:1266525‑M1/35‑30 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtcc > 1:6361139‑M1/1‑6 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtcc > 1:5060476‑M1/1‑6 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtcc > 1:3811703‑M1/1‑6 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtcc < 1:2789542‑M1/35‑30 (MQ=255) tAACGtttgccgcaggtcaattcccttttggtccg < 1:5590862‑M1/35‑31 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaa < 1:7053016‑M1/35‑33 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaa > 1:3720740‑M1/1‑3 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaa > 1:224045‑M1/1‑3 (MQ=255) cGtttgccgcaggtcaattcccttttggtccgaac < 1:4780375‑M1/35‑34 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaact < 1:3185073‑M1/35‑35 (MQ=255) | ATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTG > NC_000913/997833‑997901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |