| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 81 [0] | [0] 82 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 80 (1.110) | 46/68 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
CCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC > NC_000913/1004652‑1004720 | ttatcatatttacgaagagatcaggatgataacgt > 1:6707527‑M2/35‑35 (MQ=255)ttatcatatttacgaagagatcaggatgataacgt < 1:6265034‑M2/1‑1 (MQ=255)ttatcatatttacgaagagatcaggatgataacgt > 1:1488202‑M2/35‑35 (MQ=255)ttatcatatttacgaagagatcaggatgataacgt > 1:5178624‑M2/35‑35 (MQ=255) tatcatatttacgaagagatcaggatgataacgtt < 1:5939483‑M2/2‑1 (MQ=255) tatcatatttacgaagagatcaggatgataacgtt > 1:4516298‑M2/34‑35 (MQ=255) tatcatatttacgaagagatcaggatgataacgtt < 1:5797520‑M2/2‑1 (MQ=255) atcatatttacgaagagatcaggatgataacgttt > 1:3738476‑M2/33‑35 (MQ=255) atcatatttacgaagagatcaggatgataacgttt < 1:1453787‑M2/3‑1 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTg < 1:3707823‑M2/4‑1 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTg > 1:6479405‑M2/32‑35 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTg < 1:1994336‑M2/4‑1 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTg < 1:2526033‑M2/4‑1 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTg > 1:2322131‑M2/32‑35 (MQ=255) catatttacgaagagatcaggatgataacgTTTGc > 1:4307051‑M2/31‑35 (MQ=255) catatttacgaagagatcaggatgataacgTTTGc < 1:681951‑M2/5‑1 (MQ=255) atatttacgaagagatcaggatgataacgTTTGcc < 1:6968202‑M2/6‑1 (MQ=255) atatttacgaagagatcaggatgataacgTTTGcc > 1:1697659‑M2/30‑35 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCg > 1:1526930‑M2/29‑35 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCg > 1:2151289‑M2/29‑35 (MQ=255) atttacgaagagatcaggatgataacgTTTGCCGc < 1:834825‑M2/8‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCa > 1:6531270‑M2/27‑35 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCa > 1:7714657‑M2/27‑35 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCa > 1:5828781‑M2/27‑35 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCa > 1:5283560‑M2/27‑35 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCa > 1:1661572‑M2/27‑35 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCa > 1:1561191‑M2/27‑35 (MQ=255) acgaagagatcaggatgataacgTTTGCCGCAGGt > 1:1018873‑M2/24‑35 (MQ=255) acgaagagatcaggatgataacgTTTGCCGCAGGt < 1:1126289‑M2/12‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTc > 1:6526895‑M2/23‑35 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCaa > 1:6965738‑M2/21‑35 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCaa < 1:5113213‑M2/15‑1 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCaa < 1:2680466‑M2/15‑1 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCaa < 1:2680400‑M2/15‑1 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAAt > 1:4007531‑M2/20‑35 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAAt < 1:5057871‑M2/16‑1 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAAt > 1:5019771‑M2/20‑35 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:6245482‑M2/19‑35 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAAtt < 1:1562958‑M2/17‑1 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAAtt < 1:1991175‑M2/17‑1 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAAtt < 1:2372539‑M2/17‑1 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:6919831‑M2/19‑35 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTc < 1:7518607‑M2/18‑1 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTc < 1:6970581‑M2/18‑1 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTc < 1:4013388‑M2/18‑1 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTc > 1:2133825‑M2/18‑35 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTc > 1:7259352‑M2/18‑35 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTc > 1:432603‑M2/18‑35 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTc > 1:6769303‑M2/18‑35 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTcc > 1:2290544‑M2/17‑35 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTcc < 1:7853908‑M2/19‑1 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTcc < 1:6538281‑M2/19‑1 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTcc > 1:5642232‑M2/17‑35 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTcc < 1:3360752‑M2/19‑1 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTcc < 1:1519440‑M2/19‑1 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTccc > 1:5228711‑M2/16‑35 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTccc < 1:1455845‑M2/20‑1 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTccc < 1:7116624‑M2/20‑1 (MQ=255) tcaggatgataacgTTTGCCGCAGGTCAATTCCCt < 1:4777309‑M2/21‑1 (MQ=255) tcaggatgataacgTTTGCCGCAGGTCAATTCCCt > 1:4564626‑M2/15‑35 (MQ=255) caggatgataacgTTTGCCGCAGGTCAATTCCCtt < 1:3985102‑M2/22‑1 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCttt < 1:5737933‑M2/23‑1 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCttt < 1:4484668‑M2/23‑1 (MQ=255) ggatgataacgTTTGCCGCAGGTCAATTCCCtttt < 1:611415‑M2/24‑1 (MQ=255) gatgataacgTTTGCCGCAGGTCAATTCCCTTTTg > 1:4959411‑M2/11‑35 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTgg > 1:5832316‑M2/10‑35 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTgg < 1:917765‑M2/26‑1 (MQ=255) gataacgTTTGCCGCAGGTCAATTCCCTTTTGGTc > 1:7144964‑M2/8‑35 (MQ=255) gataacgTTTGCCGCAGGTCAATTCCCTTTTGGTc > 1:2406820‑M2/8‑35 (MQ=255) ataacgTTTGCGGCAGGTCAATTCCCTTTTGGTcc < 1:1266525‑M2/29‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:5060476‑M2/7‑35 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:3811703‑M2/7‑35 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc < 1:2789542‑M2/29‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:6361139‑M2/7‑35 (MQ=255) taacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCg < 1:5590862‑M2/30‑1 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGaa < 1:7053016‑M2/32‑1 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGaa > 1:3720740‑M2/4‑35 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGaa > 1:224045‑M2/4‑35 (MQ=255) cgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc < 1:4780375‑M2/33‑1 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt < 1:3185073‑M2/34‑1 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc > 1:4477088/1‑35 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc < 1:4276546/35‑1 (MQ=255) | CCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC > NC_000913/1004652‑1004720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |