| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 62 [0] | [0] 67 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 61 (0.840) | 35/68 | 0.1 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
GGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129364‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGT > NC_000913/1140988‑1141021 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTT < 1:7791102/35‑1GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTT < 1:5061211/35‑1 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC < 1:7743311/35‑1 ACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG < 1:1598681/35‑1 ACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG < 1:2052799/35‑1 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGC < 1:7552983/35‑1 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGC < 1:6086569/35‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT < 1:2723992/35‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT < 1:5320001/35‑1 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:2250341/1‑35 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:5613085/1‑35 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT < 1:2588676/35‑1 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:1019237/1‑35 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT < 1:6687848/35‑1 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT > 1:5824471/1‑35 GTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTA < 1:5702684/35‑1 GTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTA < 1:5376991/35‑1 GTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTA > 1:2142607/1‑35 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA > 1:6957876/1‑35 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA > 1:5699387/1‑35 AACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAA < 1:5403484/35‑1 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA < 1:4871983/35‑1 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA > 1:4695271/1‑35 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA < 1:1535590/35‑1 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA < 1:4812090/35‑1 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:5276355/1‑35 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA < 1:2205293/35‑1 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA < 1:3746741/35‑1 ATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACAT > 1:612619/1‑35 ATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACAT < 1:734778/35‑1 ATGCATTCCGGCCCGCAGTGTTCGCTTTAAAACAT > 1:5436419/1‑35 TGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA < 1:7174007/35‑1 GCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:3013696/35‑1 GCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:5722151/35‑1 GCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:3744842/35‑1 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATC > 1:2838053/1‑35 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATC < 1:2960151/35‑1 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATC < 1:689185/35‑1 ATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCA > 1:5027586/1‑35 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:5564375/35‑1 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:7507863/35‑1 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:2803789/35‑1 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:1762601/35‑1 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:1574455/35‑1 CCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:3714726/35‑1 CCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:6860191/35‑1 CCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:1659058/35‑1 CCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:6402101/35‑1 GCCTGCAGTGTTCGCTTTAAAACATATCATGAAAC > 1:5523673/1‑35 GCAGTGTTCGCTTTAAAACATATCATGAAACTGGG < 1:621254/35‑1 GCAGTGTTCGCTTTAAAACATATCATGAAACTGGG < 1:1324833/35‑1 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGT > 1:7083294/1‑35 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTA < 1:6513174/35‑1 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTA < 1:7576940/35‑1 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTA > 1:4191625/1‑35 GTGTTCGCTTTAAAACATATCATGAAACTGGGTAT < 1:6975440/35‑1 GTGTTCGCTTTAAAACATATCATGAAACTGGGTAT > 1:4223830/1‑35 TGTTCGCTTTAAAACATATCATGAAACTGGGTATG < 1:6088663/35‑1 TGTTCGCTTTAAAACATATCATGAAACTGGGTATG < 1:7258682/35‑1 TGTTCGCTTTAAAACATATCATGAAACTGGGTATG < 1:2478567/35‑1 GTTCGCTTTAAAACATATCATGAAACTGGGTATGT < 1:6812949/35‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129364‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGT > NC_000913/1140988‑1141021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |