| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 62 [0] | [0] 67 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 61 (0.840) | 35/68 | 0.1 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
AGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTT > NC_000913/1140955‑1141022 | ggacggtgtaacaatgcattccggcctgcagtgtt < 1:7791102‑M2/2‑1 (MQ=255)ggacggtgtaacaatgcattccggcctgcagtgtt < 1:5061211‑M2/2‑1 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTc < 1:7743311‑M2/3‑1 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCg < 1:1598681‑M2/4‑1 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCg < 1:2052799‑M2/4‑1 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGc < 1:7552983‑M2/5‑1 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGc < 1:6086569‑M2/5‑1 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCt < 1:5320001‑M2/6‑1 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCt < 1:2723992‑M2/6‑1 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCtt > 1:1019237‑M2/29‑35 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCtt > 1:5613085‑M2/29‑35 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCtt > 1:2250341‑M2/29‑35 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCtt < 1:2588676‑M2/7‑1 (MQ=255) tgtaacaatgcattccggcctgcagtgTTCGCttt > 1:5824471‑M2/28‑35 (MQ=255) tgtaacaatgcattccggcctgcagtgTTCGCttt < 1:6687848‑M2/8‑1 (MQ=255) gtaacaatgcattccggcctgcagtgTTCGCTTTa < 1:5702684‑M2/9‑1 (MQ=255) gtaacaatgcattccggcctgcagtgTTCGCTTTa > 1:2142607‑M2/27‑35 (MQ=255) gtaacaatgcattccggcctgcagtgTTCGCTTTa < 1:5376991‑M2/9‑1 (MQ=255) taacaatgcattccggcctgcagtgTTCGCTTTaa > 1:5699387‑M2/26‑35 (MQ=255) taacaatgcattccggcctgcagtgTTCGCTTTaa > 1:6957876‑M2/26‑35 (MQ=255) aacaatgcattccggcctgcagtgTTCGCTTTaaa < 1:5403484‑M2/11‑1 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTaaaa < 1:1535590‑M2/12‑1 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTaaaa > 1:4695271‑M2/24‑35 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTaaaa < 1:4871983‑M2/12‑1 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACa < 1:3746741‑M2/14‑1 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACa < 1:2205293‑M2/14‑1 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACa > 1:5276355‑M2/22‑35 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACa < 1:4812090‑M2/14‑1 (MQ=255) atgcattccggcctgcagtgTTCGCTTTAAAACat > 1:612619‑M2/21‑35 (MQ=255) atgcattccggcctgcagtgTTCGCTTTAAAACat < 1:734778‑M2/15‑1 (MQ=255) atgcattccggcccgcagtgTTCGCTTTAAAACat > 1:5436419‑M2/21‑35 (MQ=255) tgcattccggcctgcagtgTTCGCTTTAAAACata < 1:7174007‑M2/16‑1 (MQ=255) gcattccggcctgcagtgTTCGCTTTAAAACatat < 1:3744842‑M2/17‑1 (MQ=255) gcattccggcctgcagtgTTCGCTTTAAAACatat < 1:3013696‑M2/17‑1 (MQ=255) gcattccggcctgcagtgTTCGCTTTAAAACatat < 1:5722151‑M2/17‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATc < 1:689185‑M2/18‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATc < 1:2960151‑M2/18‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATc > 1:2838053‑M2/18‑35 (MQ=255) attccggcctgcagtgTTCGCTTTAAAACATATCa > 1:5027586‑M2/17‑35 (MQ=255) ttccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:1762601‑M2/20‑1 (MQ=255) ttccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:2803789‑M2/20‑1 (MQ=255) ttccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:5564375‑M2/20‑1 (MQ=255) ttccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:7507863‑M2/20‑1 (MQ=255) ttccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:1574455‑M2/20‑1 (MQ=255) ccggcctgcagtgTTCGCTTTAAAACATATCATGa < 1:1659058‑M2/22‑1 (MQ=255) ccggcctgcagtgTTCGCTTTAAAACATATCATGa < 1:3714726‑M2/22‑1 (MQ=255) ccggcctgcagtgTTCGCTTTAAAACATATCATGa < 1:6402101‑M2/22‑1 (MQ=255) ccggcctgcagtgTTCGCTTTAAAACATATCATGa < 1:6860191‑M2/22‑1 (MQ=255) gcctgcagtgTTCGCTTTAAAACATATCATGAAAc > 1:5523673‑M2/11‑35 (MQ=255) gcagtgTTCGCTTTAAAACATATCATGAAACTggg < 1:1324833‑M2/29‑1 (MQ=255) gcagtgTTCGCTTTAAAACATATCATGAAACTggg < 1:621254‑M2/29‑1 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGt > 1:7083294‑M2/6‑35 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTa < 1:6513174‑M2/31‑1 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTa > 1:4191625‑M2/5‑35 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTa < 1:7576940‑M2/31‑1 (MQ=255) gtgTTCGCTTTAAAACATATCATGAAACTGGGTAt < 1:6975440‑M2/32‑1 (MQ=255) gtgTTCGCTTTAAAACATATCATGAAACTGGGTAt > 1:4223830‑M2/4‑35 (MQ=255) tgTTCGCTTTAAAACATATCATGAAACTGGGTATg < 1:6088663‑M2/33‑1 (MQ=255) tgTTCGCTTTAAAACATATCATGAAACTGGGTATg < 1:7258682‑M2/33‑1 (MQ=255) tgTTCGCTTTAAAACATATCATGAAACTGGGTATg < 1:2478567‑M2/33‑1 (MQ=255) gTTCGCTTTAAAACATATCATGAAACTGGGTATGt < 1:6812949‑M2/34‑1 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGtt > 1:6015666/1‑35 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGtt > 1:374674/1‑35 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGtt > 1:7731018/1‑35 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGtt < 1:3199254/35‑1 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGtt > 1:6817851/1‑35 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGCGTATGtt > 1:695538/1‑35 (MQ=255) | AGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTT > NC_000913/1140955‑1141022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |