| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 62 [0] | [0] 67 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 61 (0.840) | 35/68 | 0.1 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTT > NC_000913/1129362‑1129430 | ccgGACGGTGTAACAATGCATTCCGGCCtgcagtg > 1:125155/1‑35 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGtt < 1:7791102‑M1/35‑3 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGtt < 1:5061211‑M1/35‑3 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttc < 1:7743311‑M1/35‑4 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcg < 1:1598681‑M1/35‑5 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcg < 1:2052799‑M1/35‑5 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc < 1:7552983‑M1/35‑6 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc < 1:6086569‑M1/35‑6 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgct < 1:5320001‑M1/35‑7 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgct < 1:2723992‑M1/35‑7 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:1019237‑M1/1‑28 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:5613085‑M1/1‑28 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctt < 1:2588676‑M1/35‑8 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:2250341‑M1/1‑28 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgcttt < 1:6687848‑M1/35‑9 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgcttt > 1:5824471‑M1/1‑27 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTGttcgcttta < 1:5702684‑M1/35‑10 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTGttcgcttta > 1:2142607‑M1/1‑26 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTGttcgcttta < 1:5376991‑M1/35‑10 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaa > 1:6957876‑M1/1‑25 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaa > 1:5699387‑M1/1‑25 (MQ=255) aaCAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:5403484‑M1/35‑12 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaa > 1:4695271‑M1/1‑23 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaa < 1:4871983‑M1/35‑13 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaa < 1:1535590‑M1/35‑13 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaaca < 1:4812090‑M1/35‑15 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaaca < 1:2205293‑M1/35‑15 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:5276355‑M1/1‑21 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaaca < 1:3746741‑M1/35‑15 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacat < 1:734778‑M1/35‑16 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacat > 1:612619‑M1/1‑20 (MQ=255) aTGCATTCCGGCCCGCAGTGttcgctttaaaacat > 1:5436419‑M1/1‑20 (MQ=255) tGCATTCCGGCCTGCAGTGttcgctttaaaacata < 1:7174007‑M1/35‑17 (MQ=255) gCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:5722151‑M1/35‑18 (MQ=255) gCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:3013696‑M1/35‑18 (MQ=255) gCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:3744842‑M1/35‑18 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatc < 1:2960151‑M1/35‑19 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatc > 1:2838053‑M1/1‑17 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatc < 1:689185‑M1/35‑19 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatca > 1:5027586‑M1/1‑16 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:5564375‑M1/35‑21 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:2803789‑M1/35‑21 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:1574455‑M1/35‑21 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:1762601‑M1/35‑21 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:7507863‑M1/35‑21 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatga < 1:3714726‑M1/35‑23 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatga < 1:6402101‑M1/35‑23 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatga < 1:1659058‑M1/35‑23 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatga < 1:6860191‑M1/35‑23 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaac > 1:5523673‑M1/1‑10 (MQ=255) gCAGTGttcgctttaaaacatatcatgaaactggg < 1:621254‑M1/35‑30 (MQ=255) gCAGTGttcgctttaaaacatatcatgaaactggg < 1:1324833‑M1/35‑30 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggt > 1:7083294‑M1/1‑5 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggta > 1:4191625‑M1/1‑4 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggta < 1:7576940‑M1/35‑32 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggta < 1:6513174‑M1/35‑32 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtat > 1:4223830‑M1/1‑3 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtat < 1:6975440‑M1/35‑33 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatg < 1:7258682‑M1/35‑34 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatg < 1:2478567‑M1/35‑34 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatg < 1:6088663‑M1/35‑34 (MQ=255) gttcgctttaaaacatatcatgaaactgggtatgt < 1:6812949‑M1/35‑35 (MQ=255) | CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTT > NC_000913/1129362‑1129430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |