New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 11971360 (0.000)18 (0.340)
+CAGATAATT		 9/50 1.8 49.5% coding (397/666 nt) ymfD e14 prophage; putative SAM‑dependent methyltransferase
?NC_000913 3979137 = 50 (0.690)coding (537/1353 nt) wzyE enterobacterial common antigen polymerase

TCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1197118‑1197136
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAAGCGTGGCTGTT  >  NC_000913/3979137‑3979151
                   |||||||||               
TCTTGATGCTAAGAACTATCAGATAATTCAAAGCG          <  1:153616/35‑1
 CTTGATGCTAAGAACTATCAGATAATTCAAAGCGT         >  1:2125030/1‑35
  TTGATGCTAAGAACTATCAGATAATTCAAAGCGTG        >  1:5188728/1‑35
  TTGATGCTAAGAACTATCAGATAATTCAAAGCGTG        >  1:4844387/1‑35
  TTGATGCTAAGAACTATCAGATAATTCAAAGCGTG        >  1:3298595/1‑35
    GATGCTAAGAACTATCAGATAATTCAAAGCGTGGC      <  1:407697/35‑1
    GATGCTAAGAACTATCAGATAATTCAAAGCGTGGC      >  1:6303147/1‑35
    GATGCTAAGAACTATCAGATAATTCAAAGCGTGGC      >  1:6225558/1‑35
    GATGCTAAGAACTATCAGATAATTCAAAGCGTGGC      >  1:4749639/1‑35
    GATGCTAAGAACTATCAGATAATTCAAAGCGTGGC      <  1:1060763/35‑1
    GATGCTAAGAACTATCAGATAATTCAAAGCGTGGC      >  1:3214146/1‑35
     ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT     >  1:2648770/1‑35
     ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT     >  1:2505700/1‑35
     ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT     >  1:1701366/1‑35
      TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG    <  1:4142612/35‑1
      TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG    >  1:598199/1‑35
       GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT   <  1:3781179/35‑1
        CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTg  >  1:7039226/1‑34
                   |||||||||               
TCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1197118‑1197136
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAAGCGTGGCTGTT  >  NC_000913/3979137‑3979151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.