| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 18 (0.340) +CAGATAATT |
9/50 | 1.8 | 49.5% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 3979137 = | 50 (0.690) | coding (537/1353 nt) | wzyE | enterobacterial common antigen polymerase | |||||
CGATGCTGGTGGTCTACTTTCTGCGCCAGGACAGCAAAGCGTGGCTGTTTTTCCTCGTCAGCACGGTCG > NC_000913/3979103‑3979171 | cGATGCTGGTGGTCTACTTTCTGCGCCAGGACAGc < 1:7754144/35‑1 (MQ=255)cGATGCTGGTGGTCTACTTTCTGCGCCAGGACAGc > 1:3577778/1‑35 (MQ=255) gATGCTGGTGGTCTACTTTCTGCGCCAGGACAGCa > 1:3680707/1‑35 (MQ=255) gATGCTGGTGGTCTACTTTCTGCGCCAGGACAGCa < 1:5199869/35‑1 (MQ=255) gATGCTGGTGGTCTACTTTCTGCGCCAGGACAGCa < 1:5460062/35‑1 (MQ=255) gATGCTGGTGGTCTACTTTCTGCGCCAGGACAGCa < 1:2049566/35‑1 (MQ=255) gATGCTGGTGGTCTACTTTCTGCGCCAGGACAGCa < 1:7314119/35‑1 (MQ=255) aTGCTGGTGGTCTACTTTCTGCGCCAGGACAGCaa > 1:3838801/1‑35 (MQ=255) aTGCTGGTGGTCTACTTTCTGCGCCAGGACAGCaa > 1:121923/1‑35 (MQ=255) aTGCTGGTGGTCTACTTTCTGCGCCAGGACAGCaa < 1:4999769/35‑1 (MQ=255) aTGCTGGTGGTCTACTTTCTGCGCCAGGACAGCaa < 1:5084836/35‑1 (MQ=255) aTGCTGGTGGTCTACTTTCTGCGCCAGGACAGCaa < 1:2482979/35‑1 (MQ=255) tGCTGGTGGTCTACTTTCTGCGCCAGGACAGCaaa < 1:854723/35‑1 (MQ=255) tGCTGGTGGTCTACTTTCTGCGCCAGGACAGCaaa > 1:1570101/1‑35 (MQ=255) gCTGGTGGTCTACTTTCTGCGCCAGGACAGCAAAg > 1:466424/1‑35 (MQ=255) cTGGTGGTCTACTTTCTGCGCCAGGACAGCAAAGc > 1:4591897/1‑35 (MQ=255) tggtggTCTACTTTCTGCGCCAGGACAGCAAAGCg < 1:7461749/35‑1 (MQ=255) tggtggTCTACTTTCTGCGCCAGGACAGCAAAGCg < 1:478278/35‑1 (MQ=255) tcttgatgctaagaactatcagataattCAAAGCg < 1:153616‑M2/7‑1 (MQ=255) ggtggtCTACTTTCTGCGCCAGGACAGCAACGCGt > 1:7675047/1‑35 (MQ=255) ggtggtCTACTTTCTGCGCCAGGACAGCAAAGCGt > 1:7507164/1‑35 (MQ=255) ggtggtCTACTTTCTGCGCCAGGACAGCAAAGCGt > 1:1067782/1‑35 (MQ=255) ggtggtCTACTTTCTGCGCCAGGACAGCAAAGCGt > 1:4172134/1‑35 (MQ=255) cttgatgctaagaactatcagataattCAAAGCGt > 1:2125030‑M2/28‑35 (MQ=255) ttgatgctaagaactatcagataattCAAAGCGTg > 1:5188728‑M2/27‑35 (MQ=255) ttgatgctaagaactatcagataattCAAAGCGTg > 1:4844387‑M2/27‑35 (MQ=255) ttgatgctaagaactatcagataattCAAAGCGTg > 1:3298595‑M2/27‑35 (MQ=255) gtggtCTACTTTCTGCGCCAGGACAGCAAAGCGTg > 1:633424/1‑35 (MQ=255) gtggtCTACTTTCTGCGCCAGGACAGCAAAGCGTg > 1:2834595/1‑35 (MQ=255) ggtCTACTTTCTGCGCCAGGACAGCAAAGCGTGGc < 1:4876928/35‑1 (MQ=255) gatgctaagaactatcagataattCAAAGCGTGGc > 1:6303147‑M2/25‑35 (MQ=255) gatgctaagaactatcagataattCAAAGCGTGGc < 1:1060763‑M2/11‑1 (MQ=255) gatgctaagaactatcagataattCAAAGCGTGGc > 1:6225558‑M2/25‑35 (MQ=255) gatgctaagaactatcagataattCAAAGCGTGGc > 1:3214146‑M2/25‑35 (MQ=255) gatgctaagaactatcagataattCAAAGCGTGGc > 1:4749639‑M2/25‑35 (MQ=255) gatgctaagaactatcagataattCAAAGCGTGGc < 1:407697‑M2/11‑1 (MQ=255) gtCTACTTTCTGCGCCAGGACAGCAAAGCGTGGCt > 1:682743/1‑35 (MQ=255) gtCTACTTTCTGCGCCAGGACAGCAAAGCGTGGCt > 1:6616659/1‑35 (MQ=255) gtCTACTTTCTGCGCCAGGACAGCAAAGCGTGGCt > 1:5774302/1‑35 (MQ=255) atgctaagaactatcagataattCAAAGCGTGGCt > 1:1701366‑M2/24‑35 (MQ=255) atgctaagaactatcagataattCAAAGCGTGGCt > 1:2648770‑M2/24‑35 (MQ=255) atgctaagaactatcagataattCAAAGCGTGGCt > 1:2505700‑M2/24‑35 (MQ=255) tgctaagaactatcagataattCAAAGCGTGGCTg < 1:4142612‑M2/13‑1 (MQ=255) tgctaagaactatcagataattCAAAGCGTGGCTg > 1:598199‑M2/23‑35 (MQ=255) tCTACTTTCTGCGCCAGGACAGCAAAGCGTGGCTg > 1:1463993/1‑35 (MQ=255) tCTACTTTCTGCGCCAGGACAGCAAAGCGTGGCTg > 1:1740127/1‑35 (MQ=255) gctaagaactatcagataattCAAAGCGTGGCTGt < 1:3781179‑M2/14‑1 (MQ=255) tACTTTCTGCGCCAGGACAGCAAAGCGTGGCTGtt < 1:1021110/35‑1 (MQ=255) tACTTTCTGCGCCAGGACAGCAAAGCGTGGCTGtt < 1:383263/35‑1 (MQ=255) tACTTTCTGCGCCAGGACAGCAAAGCGTGGCTGtt > 1:2126446/1‑35 (MQ=255) tACTTTCTGCGCCAGGACAGCAAAGCGTGGCTGtt < 1:7015172/35‑1 (MQ=255) ctaagaactatcagataattCAAAGCGTGGCTgtg > 1:7039226‑M2/21‑34 (MQ=255) aCTTTCTGCGCCAGGACAGCAAAGCGTGGCTGttt < 1:7337200/35‑1 (MQ=255) cTTTCTGCGCCAGGACAGCAAAGCGTGGCTGtttt < 1:708014/35‑1 (MQ=255) ttCTGCGCCAGGACAGCAAAGCGTGGCTGTTTTTc < 1:6560648/35‑1 (MQ=255) tCTGCGCCAGGACAGCAAAGCGTGGCTGTTTTTcc < 1:5471606/35‑1 (MQ=255) cTGCGCCAGGACAGCAAAGCGTGGCTGTTTTTCCt < 1:6833944/35‑1 (MQ=255) cTGCGCCAGGACAGCAAAGCGTGGCTGTTTTTCCt < 1:7572019/35‑1 (MQ=255) tGCGCCAGGACAGCAAAGCGTGGCTGTTTTTCCTc > 1:4093730/1‑35 (MQ=255) tGCGCCAGGACAGCAAAGCGTGGCTGTTTTTCCTc > 1:5879527/1‑35 (MQ=255) cgcCAGGACAGCAAAGCGTGGCTGTTTTTCCTCGt > 1:6687647/1‑35 (MQ=255) cgcCAGGACAGCAAAGCGTGGCTGTTTTTCCTCGt < 1:3322892/35‑1 (MQ=255) cAGGACAGCAAAGCGTGGCTGTTTTTCCTCGTCAg < 1:4631356/35‑1 (MQ=255) ggACAGCAAAGCGTGGCTGTTTTTCCTTGTCAGCa > 1:6243997/1‑35 (MQ=255) ggACAGCAAAGCGTGGCTGTTTTTCCTCGTCAGCa > 1:6442728/1‑35 (MQ=255) gACAGCAAAGCGTGGCTGTTTTTCCTCGTCAGCAc > 1:7228911/1‑35 (MQ=255) gACAGCAAAGCGTGGCTGTTTTTCCTCGTCAGCAc < 1:458125/35‑1 (MQ=255) gACAGCAAAGCGTGGCTGTTTTTCCTCGTCAGCAc > 1:1086845/1‑35 (MQ=255) cAAAGCGTGGCTGTTTTTCCTCGTCAGCACGGTCg > 1:670390/1‑35 (MQ=255) cAAAGCGTGGCTGTTTTTCCTCGTCAGCACGGTCg > 1:7296842/1‑35 (MQ=255) | CGATGCTGGTGGTCTACTTTCTGCGCCAGGACAGCAAAGCGTGGCTGTTTTTCCTCGTCAGCACGGTCG > NC_000913/3979103‑3979171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |