New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1197136	0 (0.000)	18 (0.340) +CAGATAATT	9/50	1.8	49.5%	coding (397/666 nt)	ymfD	e14 prophage; putative SAM‑dependent methyltransferase
	?	NC_000913	3979137 =	50 (0.690)					coding (537/1353 nt)	wzyE	enterobacterial common antigen polymerase

CCTGATTTTAGTAATCTCTTGATGCTAAGAACTATTTTGTCGATTGTATCCCGACAAGG  >  NC_000913/1197102‑1197160                                   |                         ccTGATTTTAGTAATCTCTTGATGCTAAGAACTAT                          <  1:369056‑M1/35‑1 (MQ=255) ccTGATTTTAGTAATCTCTTGATGCTAAGAACTAT                          <  1:4909880‑M1/35‑1 (MQ=255) ccTGATTTTAGTAATCTCTTGATGCTAAGAACTAT                          <  1:4909948‑M1/35‑1 (MQ=255) ccTGATTTTAGTAATCTCTTGATGCTAAGAACTAT                          <  1:4976609‑M1/35‑1 (MQ=255) ccTGATTTTAGTAATCTCTTGATGCTAAGAACTAT                          <  1:2738385‑M1/35‑1 (MQ=255) ccTGATTTTAGTAATCTCTTGATGCTAAGAACTAT                          <  1:5809048‑M1/35‑1 (MQ=255) ccTGATTTTAGTAATCTCTTGATGCTAAGAACTAT                          <  1:6264778‑M1/35‑1 (MQ=255) ccTGATTTTAGTAATCTCTTGATGCTAAGAACTAT                          <  1:6421808‑M1/35‑1 (MQ=255) ccTGATTTTAGTAATCTCTTGATGCTAAGAACTAT                          <  1:691917‑M1/35‑1 (MQ=255)  cTGATTTTAGTAATCTCTTGATGCTAAGAACTATc                         <  1:932827‑M1/35‑2 (MQ=255)  cTGATTTTAGTAATCTCTTGATGCTAAGAACTATc                         <  1:2846687‑M1/35‑2 (MQ=255)  cTGATTTTAGTAATCTCTTGATGCTAAGAACTATc                         >  1:5206685‑M1/1‑34 (MQ=255)  cTGATTTTAGTAATCTCTTGATGCTAAGAACTATc                         <  1:7125779‑M1/35‑2 (MQ=255)   tGATTTTAGTAATCTCTTGATGCTAAGAACTATca                        <  1:1552003‑M1/35‑3 (MQ=255)   tGATTTTAGTAATCTCTTGATGCTAAGAACTATca                        <  1:7393997‑M1/35‑3 (MQ=255)   tGATTTTAGTAATCTCTTGATGCTAAGAACTATca                        <  1:2958731‑M1/35‑3 (MQ=255)    gATTTTAGTAATCTCTTGATGCTAAGAACTATcag                       <  1:2853909‑M1/35‑4 (MQ=255)    gATTTTAGGAATCTCTTGATGCTAAGAACTATcag                       <  1:785657‑M1/35‑4 (MQ=255)     aTTTTAGTAATCTCTTGATGCTAAGAACTATcaga                      >  1:6728421‑M1/1‑31 (MQ=255)     aTTTTAGTAATCTCTTGATGCTAAGAACTATcaga                      >  1:6054594‑M1/1‑31 (MQ=255)     aTTTTAGTAATCTCTTGATGCTAAGAACTATcaga                      >  1:7154966‑M1/1‑31 (MQ=255)     aTTTTAGTAATCTCTTGATGCTAAGAACTATcaga                      <  1:5789090‑M1/35‑5 (MQ=255)     aTTTTAGTAATCTCTTGATGCTAAGAACTATcaga                      <  1:1618695‑M1/35‑5 (MQ=255)     aTTTTAGTAATCTCTTGATGCTAAGAACTATcaga                      <  1:1448111‑M1/35‑5 (MQ=255)     aTTTTAGTAATCTCTTGATGCTAAGAACTATcaga                      >  1:7259323‑M1/1‑31 (MQ=255)     aTTTTAGTAATCTCTTGATGCTAAGAACTATcaga                      <  1:7315149‑M1/35‑5 (MQ=255)       tttAGTAATCTCTTGATGCTAAGAACTATcagata                    >  1:7163928‑M1/1‑29 (MQ=255)        ttAGTAATCTCTTGATGCTAAGAACTATcagataa                   >  1:7089592‑M1/1‑28 (MQ=255)        ttAGTAATCTCTTGATGCTAAGAACTATcagataa                   <  1:6731353‑M1/35‑8 (MQ=255)        ttAGTAATCTCTTGATGCTAAGAACTATcagataa                   >  1:1091108‑M1/1‑28 (MQ=255)        ttAGTAATCTCTTGATGCTAAGAACTATcagataa                   <  1:3186756‑M1/35‑8 (MQ=255)        ttAGTAATCTCTTGATGCTAAGAACTATcagataa                   <  1:1305454‑M1/35‑8 (MQ=255)         tAGTAATCTCTTGATGCTAAGAACTATcagataat                  <  1:6227422‑M1/35‑9 (MQ=255)         tAGTAATCTCTTGATGCTAAGAACTATcagataat                  <  1:2755562‑M1/35‑9 (MQ=255)         tAGTAATCTCTTGATGCTAAGAACTATcagataat                  >  1:464314‑M1/1‑27 (MQ=255)         tAGTAATCTCTTGATGCTAAGAACTATcagataat                  <  1:1213969‑M1/35‑9 (MQ=255)          aGTAATCTCTTGATGCTAAGAACTATcagataatt                 >  1:4969068‑M1/1‑26 (MQ=255)          aGTAATCTCTTGATGCTAAGAACTATcagataatt                 <  1:6181067‑M1/35‑10 (MQ=255)          aGTAATCTCTTGATGCTAAGAACTATcagataatt                 >  1:1546776‑M1/1‑26 (MQ=255)           gTAATCTCTTGATGCTAAGAACTATccgataattc                >  1:2561814‑M1/1‑25 (MQ=255)           gTAATCTCTTGATGCTAAGAACTATcagataattc                <  1:153109‑M1/35‑11 (MQ=255)           gTAATCTCTTGATGCTAAGAACTATcagataattc                >  1:4897917‑M1/1‑25 (MQ=255)           gTAATCTCTTGATGCTAAGAACTATcagataattc                >  1:3160546‑M1/1‑25 (MQ=255)            tAATCTCTTGATGCTAAGAACTATcagataattca               >  1:5809882‑M1/1‑24 (MQ=255)            tAATCTCTTGATGCTAAGAACTATcagataattca               <  1:7038947‑M1/35‑12 (MQ=255)            tAATCTCTTGATGCTAAGAACTATcagataattca               >  1:7571108‑M1/1‑24 (MQ=255)            tAATCTCTTGATGCTAAGAACTATcagataattca               <  1:4580797‑M1/35‑12 (MQ=255)            tAATCTCTTGATGCTAAGAACTATcagataattca               >  1:6284201‑M1/1‑24 (MQ=255)             aaTCTCTTGATGCTAAGAACTATcagataattcaa              >  1:2351520‑M1/1‑23 (MQ=255)             aaTCTCTTGATGCTAAGAACTATcagataattcaa              >  1:1771959‑M1/1‑23 (MQ=255)              gtctctTGATGCTAAGAACTATcagataattcaaa             >  1:1275416‑M1/2‑22 (MQ=255)              aTCTCTTGATGCTAAGAACTATcagataattcaaa             >  1:1466304‑M1/1‑22 (MQ=255)              aTCTCTTGATGCTAAGAACTATcagataattcaaa             >  1:2610237‑M1/1‑22 (MQ=255)              aTCTCTTGATGCTAAGAACTATcagataattcaaa             >  1:2832837‑M1/1‑22 (MQ=255)              aTCTCTTGATGCTAAGAACTATcagataattcaaa             >  1:1275368‑M1/1‑22 (MQ=255)              aTCTCTTGATGCTAAGAACTATcagataattcaaa             >  1:4636635‑M1/1‑22 (MQ=255)              aTCTCTTGATGCTAAGAACTATcagataattcaaa             <  1:4401343‑M1/35‑14 (MQ=255)               tctcTTGATGCTAAGAACTATcagataattcaaag            >  1:3422620‑M1/1‑21 (MQ=255)               tctcTTGATGCTAAGAACTATcagataattcaaag            >  1:6217493‑M1/1‑21 (MQ=255)               tctcTTGATGCTAAGAACTATcagataattcaaag            <  1:3468191‑M1/35‑15 (MQ=255)                 tctTGATGCTAAGAACTATcagataattcaaagcg          <  1:153616‑M1/35‑17 (MQ=255)                  ctTGATGCTAAGAACTATcagataattcaaagcgt         >  1:2125030‑M1/1‑18 (MQ=255)                   ttGATGCTAAGAACTATcagataattcaaagcgtg        >  1:3298595‑M1/1‑17 (MQ=255)                   ttGATGCTAAGAACTATcagataattcaaagcgtg        >  1:5188728‑M1/1‑17 (MQ=255)                   ttGATGCTAAGAACTATcagataattcaaagcgtg        >  1:4844387‑M1/1‑17 (MQ=255)                     gATGCTAAGAACTATcagataattcaaagcgtggc      <  1:1060763‑M1/35‑21 (MQ=255)                     gATGCTAAGAACTATcagataattcaaagcgtggc      >  1:6225558‑M1/1‑15 (MQ=255)                     gATGCTAAGAACTATcagataattcaaagcgtggc      >  1:3214146‑M1/1‑15 (MQ=255)                     gATGCTAAGAACTATcagataattcaaagcgtggc      <  1:407697‑M1/35‑21 (MQ=255)                     gATGCTAAGAACTATcagataattcaaagcgtggc      >  1:4749639‑M1/1‑15 (MQ=255)                     gATGCTAAGAACTATcagataattcaaagcgtggc      >  1:6303147‑M1/1‑15 (MQ=255)                      aTGCTAAGAACTATcagataattcaaagcgtggct     >  1:1701366‑M1/1‑14 (MQ=255)                      aTGCTAAGAACTATcagataattcaaagcgtggct     >  1:2648770‑M1/1‑14 (MQ=255)                      aTGCTAAGAACTATcagataattcaaagcgtggct     >  1:2505700‑M1/1‑14 (MQ=255)                       tGCTAAGAACTATcagataattcaaagcgtggctg    <  1:4142612‑M1/35‑23 (MQ=255)                       tGCTAAGAACTATcagataattcaaagcgtggctg    >  1:598199‑M1/1‑13 (MQ=255)                        gCTAAGAACTATcagataattcaaagcgtggctgt   <  1:3781179‑M1/35‑24 (MQ=255)                         cTAAGAACTATcagataattcaaagcgtggctgtg  >  1:7039226‑M1/1‑11 (MQ=255)                                   |                         CCTGATTTTAGTAATCTCTTGATGCTAAGAACTATTTTGTCGATTGTATCCCGACAAGG  >  NC_000913/1197102‑1197160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.