| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 111 [0] | [0] 107 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 0 (0.000) | 105 (1.450) | 43/68 | 0.0 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
Only 100 of 105 total aligned reads displayed.
CACAGCCTGTTTATTTTCTGTTATCAGAACGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2286367‑2286400‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAGCTTTCATCCTATGAAATTAATTGCTGTTAA > NC_000913/2290181‑2290214 CACAGCCTGTTTATTTTCTGTTATCAGAACGTCCT < 1:7569894/35‑1CACAGCCTGGTTATTTTCTGTTATCAGAACGTCCT < 1:6048015/35‑1 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTG > 1:2771828/1‑35 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTG > 1:6598234/1‑35 AGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAG > 1:6352968/1‑35 GCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGC < 1:35655/35‑1 GCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGC < 1:7110399/35‑1 CCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCT > 1:3253309/1‑35 CTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTT < 1:6782398/35‑1 TGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTT < 1:3850152/35‑1 TGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTT < 1:6192945/35‑1 TGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTT < 1:4332014/35‑1 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCA > 1:3512756/1‑35 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCA > 1:1824901/1‑35 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCA > 1:6032683/1‑35 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCA > 1:1397464/1‑35 TTATTTTCTGTTATCAGAACGTCCTGAGCTTTCAT < 1:7228045/35‑1 TTATTTTCTGTTATCAGAACGTCCTGAGCTTTCAT < 1:6953724/35‑1 TTATTTTCTGTTATCAGAACGTCCTGAGCTTTCAT < 1:419943/35‑1 TATTTTCTGTTATCAGAACGTCCTGAGCTTTCATC < 1:7142240/35‑1 TATTTTCTGTTATCAGAACGTCCTGAGCTTTCATC > 1:1881532/1‑35 TATTTTCTGTTATCAGAACGTCCTGAGCTTTCATC < 1:4085644/35‑1 TATTTTCTGTTATCAGAACGTCCTGAGCTTTCATC < 1:6421306/35‑1 ATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCC > 1:2945699/1‑35 TTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCT < 1:2240947/35‑1 TTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTA < 1:6615029/35‑1 TTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTA < 1:691787/35‑1 TTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTA < 1:5562860/35‑1 TTCTGTTATCAGAACGTCCTGAGCTTTCATCCTAT > 1:2774220/1‑35 TTCTGTTATCAGAACGTCCTGAGCTTTCATCCTAT < 1:4572400/35‑1 TTCTGTTATCAGAACGTCCTGAGCTTTCATCCTAT > 1:4580673/1‑35 TTCTGTTATCAGAACGTCCTGAGCTTTCATCCTAT < 1:139533/35‑1 TTCTGTTATCAGAACGTCCTGAGCTTTCATCCTAT > 1:4888560/1‑35 TCTGTTATCAGAACGTCCTGAGCTTTCATCCTATG > 1:3954354/1‑35 TCTGTTATCAGAACGTCCTGAGCTTTCATCCTATG < 1:4900868/35‑1 TCTGTTATCAGAACGTCCTGAGCTTTCATCCTATG > 1:5566772/1‑35 TCTGTTATCAGAACGTCCTGAGCTTTCATCCTATG < 1:6522360/35‑1 TCTGTTATCAGAACGTCCTGAGCTTTCATCCTATG < 1:215293/35‑1 TCTGTTATCAGAACGTCCTGAGCTTTCATCCTATG < 1:1712168/35‑1 CTGTTATCAGAACGTCCTGAGCTTTCATCCTATGA > 1:5644867/1‑35 CTGTTATCAGAACGTCCTGAGCTTTCATCCTATGA < 1:3764052/35‑1 CTGTTATCAGAACGTCCTGAGCTTTCATCCTATGA < 1:1470161/35‑1 CTGTTATCAGAACGTCCTGAGCTTTCATCCTATGA < 1:4006433/35‑1 TGTTATCAGAACGTCCTGCGCTTTCATCCTATGAA > 1:1646320/1‑35 TGTTATCAGAACGTCCTGAGCTTTCATCCTATGAA > 1:7790007/1‑35 TGTTATCAGAACGTCCTGAGCTTTCATCCTATGAA > 1:1393384/1‑35 GTTATCAGAACGTCCTGAGCTTTCATCCTATGAAA > 1:3028458/1‑35 GTTATCAGAACGTCCTGAGCTTTCATCCTATGAAA < 1:7334784/35‑1 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT > 1:7762350/1‑35 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT > 1:2157573/1‑35 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT > 1:6798357/1‑35 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT > 1:2120939/1‑35 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT < 1:1937374/35‑1 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT > 1:7242976/1‑35 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT < 1:1342878/35‑1 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT < 1:7609079/35‑1 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT < 1:4150491/35‑1 TATCAGAACGTCCTGAGCTTTCATCCTATGAAATT > 1:6427248/1‑35 TATCAGAACGTCCTGAGCTTTCATCCTATGAAATT < 1:6282682/35‑1 TATCAGAACGTCCTGAGCTTTCATCCTATGAAATT > 1:2980658/1‑35 ATCAGAACGTCCTGAGCTTTCATCCTATGAAATTA > 1:2031302/1‑35 ATCAGAACGTCCTGAGCTTTCATCCTATGAAATTA > 1:7428419/1‑35 ATCAGAACGTCCTGAGCTTTCATCCTATGAAATTA > 1:6471201/1‑35 ATCAGAACGTCCTGAGCTTTCATCCTATGAAATTA > 1:2963905/1‑35 ATCAGAACGTCCTGAGCTTTCATCCTATGAAATTA > 1:2521142/1‑35 ATCAGAACGTCCTGAGCTTTCATCCTATGAAATTA < 1:373646/35‑1 TCAGAACGTCCTGAGCTTTCATCCTATGAAATTAA < 1:3013839/35‑1 TCAGAACGTCCTGAGCTTTCATCCTATGAAATTAA > 1:366438/1‑35 TCAGAACGTCCTGAGCTTTCATCCTATGAAATTAA > 1:3539690/1‑35 TCAGAACGTCCTGAGCTTTCATCCTATGAAATTAA > 1:5058183/1‑35 TCAGAACGTCCTGAGCTTTCATCCTATGAAATTAA > 1:6595934/1‑35 CAGAACGTCCTGAGCTTTCATCCTATGAAATTAAT < 1:3391870/35‑1 CAGAACGTCCTGAGCTTTCATCCTATGAAATTAAT < 1:1896537/35‑1 AGAACGTCCTGAGCTTTCATCCTATGAAATTAATT > 1:7808094/1‑35 AGAACGTCCTGAGCTTTCATCCTATGAAATTAATT > 1:7660699/1‑35 GAACGTCCTGAGCTTTCATCCTATGAAATTAATTG > 1:2432416/1‑35 GAACGTCCTGAGCTTTCATCCTATGAAATTAATTG > 1:3102652/1‑35 AACGTCCTGAGCTTTCATCCTATGAAATTAATTGC > 1:7349542/1‑35 AACGTCCTGAGCTTTCATCCTATGAAATTAATTGC > 1:5602047/1‑35 ACGTCCTGAGCTTTCATCCTATGAAGTTAATTGCT > 1:719709/1‑35 ACGTCCTGAGCTTTCATCCTATGAAATTAATTGCT < 1:3234109/35‑1 CGTCCTGAGCTTTCATCCTATGAAATTAATTGCTG > 1:4883548/1‑35 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGT < 1:5093730/35‑1 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGT < 1:3526233/35‑1 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGT < 1:1732620/35‑1 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGT < 1:7859877/35‑1 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGT < 1:7094184/35‑1 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGT < 1:311018/35‑1 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGT < 1:2330700/35‑1 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGT < 1:5851377/35‑1 CCTGAGCTTTCATCCTATGAAATTAATTGCTGTTA < 1:3867454/35‑1 CCTGAGCTTTCATCCTATGAAATTAATTGCTGTTA < 1:7883759/35‑1 CCTGAGCTTTCATCCTATGAAATTAATTGCTGTTA < 1:2093225/35‑1 CCTGAGCTTTCATCCTATGAAATTAATTGCTGTTA < 1:5036255/35‑1 CTGAGCTTTCATCCTATGAAATTAATTGCTGTTAA < 1:85656/35‑1 CTGAGCTTTCATCCTATGAAATTAATTGCTGTTAA > 1:7332257/1‑35 CTGAGCTTTCATCCTATGAAATTAATTGCTGTTAA < 1:2293020/35‑1 CTGAGCTTTCATCCTATGAAATTAATTGCTGTTAA < 1:3502751/35‑1 CTGAGCTTTCATCCTATGAAATTAATTGCTGTTAA > 1:4646573/1‑35 CTGAGCTTTCATCCTATGAAATTAATTGCTGTTAA > 1:3770672/1‑35 CACAGCCTGTTTATTTTCTGTTATCAGAACGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2286367‑2286400‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAGCTTTCATCCTATGAAATTAATTGCTGTTAA > NC_000913/2290181‑2290214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |