| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 76 [0] | [0] 84 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 68 (1.000) +GA |
34/64 | 0.1 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110646‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATC > NC_000913/3136382‑3136415 || CACTGACATCAATTTGTGTCACCCGCAGCGCATAG > 1:5836306/1‑35CACTGACATCAATTTGTGTCACCCGCAGCGCATAG < 1:2376418/35‑1CACTGACATCAATTTGTGTCACCCACAGCGCATAG < 1:4168272/35‑1 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGA > 1:96087/1‑35 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGA > 1:6845459/1‑35 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 1:3951322/35‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAA > 1:6497918/1‑35 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAA > 1:4613192/1‑35 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAA > 1:4448670/1‑35 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 1:2154487/35‑1 TGACATCAATTTGTGTCACCCGCAGCGCATAGAAC > 1:981445/1‑35 TGACATCAATTTGTGTCACCCGCAGCGCATAGAAC > 1:1194208/1‑35 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGC < 1:5830421/35‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGC < 1:7371379/35‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCC < 1:416532/35‑1 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA < 1:4840402/35‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCAT < 1:5598225/35‑1 CAATTTGTGTCACCCGCAGCGCATAGAACGCCATT < 1:1414940/35‑1 CAATTTGTGTCACCCGCAGCGCATAGAACGCCATT < 1:1444465/35‑1 CAATTTGTGTCACCCGCAGCGCATAGAACGCCATT < 1:4680584/35‑1 CAATTTGTGTCACCCGCAGCGCATAGAACGCCATT < 1:2214497/35‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTT > 1:7685000/1‑35 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 1:684355/35‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 1:4225943/35‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTT > 1:3674400/1‑35 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 1:3871202/35‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTT > 1:5754990/1‑35 ATTTGTGTCACCCGCAGCGCATAGAACGCCCTTTT > 1:1257106/1‑35 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:1395986/1‑35 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:379213/1‑35 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 1:813417/35‑1 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 1:6946695/1‑35 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 1:4998667/35‑1 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:3874998/1‑35 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 1:7367554/35‑1 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:4743449/1‑35 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:7533047/1‑35 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 1:1563780/35‑1 GTCACCCGCAGCGCATAGAACGCCATTTTGAATTT < 1:5156975/35‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTA > 1:4952373/1‑35 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTA < 1:5256369/35‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTA < 1:7281376/35‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTA < 1:2200463/35‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTA < 1:7699678/35‑1 CACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 1:4566036/35‑1 CACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 1:2761367/35‑1 cCCCGCAGCGCATAGAACGCCATTTTGAATTTACG < 1:4006310/34‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACG > 1:5194722/1‑35 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAA < 1:7261797/35‑1 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAA < 1:2340608/35‑1 CGCAGCGCATAGAACGCCATTTTGAATTTACGAAC > 1:3612794/1‑35 AGCGCATAGAACGCCATTTTGAATTTACGAACGGA < 1:4514116/35‑1 AGCGCATAGAACGCCATTTTGAATTTACGAACGGA < 1:4319170/35‑1 AGCGCATAGAACGCCATTTTGAATTTACGAACGGA > 1:3871106/1‑35 GCGCATAGAACGCCATTTTGAATTTACGAACGGAC > 1:6326519/1‑35 GCGCATAGAACGCCATTTTGAATTTACGAACGGAC > 1:1926519/1‑35 GCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:1871050/35‑1 CGCATAGAACGCCATTTTGAATTTACGAACGGACG < 1:540342/35‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:188514/1‑35 CATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:7849053/1‑35 CATAGAACGCCATTTTGAATTTACGAACGGACGCA < 1:5646010/35‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:1886811/1‑35 CATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:213423/1‑35 CATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:2522335/1‑35 CATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:5769323/1‑35 ATAGAACGCCATTTTGAATTTACGAACGGACGCAT < 1:4146081/35‑1 ATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 1:2814725/1‑35 ATAGAACGCCATTTTGAATTTACGAACGGACGCAT < 1:6457166/35‑1 TAGAACGCCATTTTGAATTTACGAACGGACGCATT > 1:1106552/1‑35 TAGAACGCCATTTTGAATTTACGAACGGACGCATT > 1:1343440/1‑35 TAGAACGCCATTTTGAATTTACGAACGGACGCATT < 1:5388647/35‑1 TAGAACGCCATTTTGAATTTACGAACGGACGCATT > 1:1954148/1‑35 AGAACGCCATTTTGAATTTACGAACGGACGCATTA > 1:1191668/1‑35 AGAACGCCATTTTGAATTTACGAACGGACGCATTA > 1:831398/1‑35 GAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:6228451/1‑35 GAACGCCATTTTGAATTTACGAACGGACGCATTAT < 1:7786730/35‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:5859725/1‑35 GAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:2354905/1‑35 GAACGCCATTTTGAATTTACGAACGGACGCATTAT < 1:4953441/35‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:5025140/1‑35 GAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:3075590/1‑35 GAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:1194021/1‑35 GAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:4801310/1‑35 AACGCCATTTTGAATTTACGAACGGACGCATTATC < 1:1547804/35‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATC < 1:7238218/35‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATC > 1:7084439/1‑35 || CACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110646‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATC > NC_000913/3136382‑3136415 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |