| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 76 [0] | [0] 84 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 68 (1.000) +GA |
34/64 | 0.1 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
AAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCA > NC_000913/3136348‑3136416 | ctgacatcaatttgtgtcacccgcagcgcatagaa > 1:6497918‑M2/35‑35 (MQ=255)ctgacatcaatttgtgtcacccgcagcgcatagaa > 1:4613192‑M2/35‑35 (MQ=255)ctgacatcaatttgtgtcacccgcagcgcatagaa > 1:4448670‑M2/35‑35 (MQ=255)ctgacatcaatttgtgtcacccgcagcgcatagaa < 1:2154487‑M2/1‑1 (MQ=255) tgacatcaatttgtgtcacccgcagcgcatagaAc > 1:981445‑M2/34‑35 (MQ=255) tgacatcaatttgtgtcacccgcagcgcatagaAc > 1:1194208‑M2/34‑35 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGc < 1:7371379‑M2/4‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGc < 1:5830421‑M2/4‑1 (MQ=255) catcaatttgtgtcacccgcagcgcatagaACGcc < 1:416532‑M2/5‑1 (MQ=255) atcaatttgtgtcacccgcagcgcatagaACGCCa < 1:4840402‑M2/6‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCAt < 1:5598225‑M2/7‑1 (MQ=255) caatttgtgtcacccgcagcgcatagaACGCCAtt < 1:4680584‑M2/8‑1 (MQ=255) caatttgtgtcacccgcagcgcatagaACGCCAtt < 1:2214497‑M2/8‑1 (MQ=255) caatttgtgtcacccgcagcgcatagaACGCCAtt < 1:1414940‑M2/8‑1 (MQ=255) caatttgtgtcacccgcagcgcatagaACGCCAtt < 1:1444465‑M2/8‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCAttt > 1:7685000‑M2/27‑35 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCAttt > 1:5754990‑M2/27‑35 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCAttt < 1:4225943‑M2/9‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCAttt < 1:3871202‑M2/9‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCAttt > 1:3674400‑M2/27‑35 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCAttt < 1:684355‑M2/9‑1 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCCtttt > 1:1257106‑M2/26‑35 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCAtttt < 1:813417‑M2/10‑1 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCAtttt > 1:1395986‑M2/26‑35 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCAtttt > 1:379213‑M2/26‑35 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGaa > 1:6946695‑M2/23‑35 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAAtt < 1:4998667‑M2/15‑1 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:3874998‑M2/21‑35 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:4743449‑M2/21‑35 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAAtt < 1:1563780‑M2/15‑1 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAAtt < 1:7367554‑M2/15‑1 (MQ=255) tgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:7533047‑M2/21‑35 (MQ=255) gtcacccgcagcgcatagaACGCCATTTTGAAttt < 1:5156975‑M2/16‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTa < 1:7281376‑M2/17‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTa > 1:4952373‑M2/19‑35 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTa < 1:5256369‑M2/17‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTa < 1:7699678‑M2/17‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTa < 1:2200463‑M2/17‑1 (MQ=255) cacccgcagcgcatagaACGCCATTTTGAATTTAc < 1:2761367‑M2/18‑1 (MQ=255) cacccgcagcgcatagaACGCCATTTTGAATTTAc < 1:4566036‑M2/18‑1 (MQ=255) ccccgcagcgcatagaACGCCATTTTGAATTTACg < 1:4006310‑M2/19‑1 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACg > 1:5194722‑M2/17‑35 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGaa < 1:2340608‑M2/21‑1 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGaa < 1:7261797‑M2/21‑1 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAAc > 1:3612794‑M2/14‑35 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGa < 1:4514116‑M2/25‑1 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGa < 1:4319170‑M2/25‑1 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGa > 1:3871106‑M2/11‑35 (MQ=255) gcgcatagaACGCCATTTTGAATTTACGAACGGAc > 1:6326519‑M2/10‑35 (MQ=255) gcgcatagaACGCCATTTTGAATTTACGAACGGAc > 1:1926519‑M2/10‑35 (MQ=255) gcgcatagaACGCCATTTTGAATTTACGAACGGAc < 1:1871050‑M2/26‑1 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACg < 1:540342‑M2/27‑1 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCa > 1:2522335‑M2/7‑35 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCa > 1:1886811‑M2/7‑35 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCa > 1:7849053‑M2/7‑35 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCa < 1:5646010‑M2/29‑1 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCa > 1:5769323‑M2/7‑35 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCa > 1:188514‑M2/7‑35 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCa > 1:213423‑M2/7‑35 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCAt > 1:2814725‑M2/6‑35 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCAt < 1:6457166‑M2/30‑1 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCAt < 1:4146081‑M2/30‑1 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCAtt > 1:1954148‑M2/5‑35 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCAtt > 1:1343440‑M2/5‑35 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCAtt > 1:1106552‑M2/5‑35 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCAtt < 1:5388647‑M2/31‑1 (MQ=255) agaACGCCATTTTGAATTTACGAACGGACGCATTa > 1:831398‑M2/4‑35 (MQ=255) agaACGCCATTTTGAATTTACGAACGGACGCATTa > 1:1191668‑M2/4‑35 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:3075590‑M2/3‑35 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTAt < 1:7786730‑M2/33‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:1194021‑M2/3‑35 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:2354905‑M2/3‑35 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:5025140‑M2/3‑35 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:6228451‑M2/3‑35 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:5859725‑M2/3‑35 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:4801310‑M2/3‑35 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTAt < 1:4953441‑M2/33‑1 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATc < 1:7238218‑M2/34‑1 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATc > 1:7084439‑M2/2‑35 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATc < 1:1547804‑M2/34‑1 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCa > 1:287750/1‑35 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCa > 1:5775665/1‑35 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCa > 1:562434/1‑35 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCa < 1:5351904/35‑1 (MQ=255) | AAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCA > NC_000913/3136348‑3136416 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |