| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 76 [0] | [0] 84 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 68 (1.000) +GA |
34/64 | 0.1 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
GCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGG > NC_000913/3110645‑3110713 | gcaCTGACATCAATTTGTGTCACCCGCAGCGCata < 1:6348890/35‑1 (MQ=255)gcaCTGACATCAATTTGTGTCACCCGCAGCGCata < 1:2119275/35‑1 (MQ=255) cACTGACATCAATTTGTGTCACCCGCAGCGCATAg < 1:2376418‑M1/35‑2 (MQ=255) cACTGACATCAATTTGTGTCACCCGCAGCGCATAg > 1:5836306‑M1/1‑34 (MQ=255) cACTGACATCAATTTGTGTCACCCACAGCGCATAg < 1:4168272‑M1/35‑2 (MQ=255) aCTGACATCAATTTGTGTCACCCGCAGCGCATAga < 1:3951322‑M1/35‑3 (MQ=255) aCTGACATCAATTTGTGTCACCCGCAGCGCATAga > 1:96087‑M1/1‑33 (MQ=255) aCTGACATCAATTTGTGTCACCCGCAGCGCATAga > 1:6845459‑M1/1‑33 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaa > 1:4448670‑M1/1‑32 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaa < 1:2154487‑M1/35‑4 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaa > 1:4613192‑M1/1‑32 (MQ=255) cTGACATCAATTTGTGTCACCCGCAGCGCATAgaa > 1:6497918‑M1/1‑32 (MQ=255) tGACATCAATTTGTGTCACCCGCAGCGCATAgaac > 1:981445‑M1/1‑31 (MQ=255) tGACATCAATTTGTGTCACCCGCAGCGCATAgaac > 1:1194208‑M1/1‑31 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgc < 1:7371379‑M1/35‑7 (MQ=255) aCATCAATTTGTGTCACCCGCAGCGCATAgaacgc < 1:5830421‑M1/35‑7 (MQ=255) cATCAATTTGTGTCACCCGCAGCGCATAgaacgcc < 1:416532‑M1/35‑8 (MQ=255) aTCAATTTGTGTCACCCGCAGCGCATAgaacgcca < 1:4840402‑M1/35‑9 (MQ=255) tCAATTTGTGTCACCCGCAGCGCATAgaacgccat < 1:5598225‑M1/35‑10 (MQ=255) cAATTTGTGTCACCCGCAGCGCATAgaacgccatt < 1:4680584‑M1/35‑11 (MQ=255) cAATTTGTGTCACCCGCAGCGCATAgaacgccatt < 1:2214497‑M1/35‑11 (MQ=255) cAATTTGTGTCACCCGCAGCGCATAgaacgccatt < 1:1444465‑M1/35‑11 (MQ=255) cAATTTGTGTCACCCGCAGCGCATAgaacgccatt < 1:1414940‑M1/35‑11 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattt > 1:5754990‑M1/1‑24 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattt < 1:684355‑M1/35‑12 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattt < 1:4225943‑M1/35‑12 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattt < 1:3871202‑M1/35‑12 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattt > 1:3674400‑M1/1‑24 (MQ=255) aaTTTGTGTCACCCGCAGCGCATAgaacgccattt > 1:7685000‑M1/1‑24 (MQ=255) aTTTGTGTCACCCGCAGCGCATAgaacgccctttt > 1:1257106‑M1/1‑23 (MQ=255) aTTTGTGTCACCCGCAGCGCATAgaacgccatttt > 1:379213‑M1/1‑23 (MQ=255) aTTTGTGTCACCCGCAGCGCATAgaacgccatttt > 1:1395986‑M1/1‑23 (MQ=255) aTTTGTGTCACCCGCAGCGCATAgaacgccatttt < 1:813417‑M1/35‑13 (MQ=255) tgtgTCACCCGCAGCGCATAgaacgccattttgaa > 1:6946695‑M1/1‑20 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatt > 1:7533047‑M1/1‑18 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatt < 1:1563780‑M1/35‑18 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatt < 1:4998667‑M1/35‑18 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatt > 1:4743449‑M1/1‑18 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatt < 1:7367554‑M1/35‑18 (MQ=255) tgtCACCCGCAGCGCATAgaacgccattttgaatt > 1:3874998‑M1/1‑18 (MQ=255) gtCACCCGCAGCGCATAgaacgccattttgaattt < 1:5156975‑M1/35‑19 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaattta < 1:2200463‑M1/35‑20 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaattta < 1:7281376‑M1/35‑20 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaattta < 1:7699678‑M1/35‑20 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaattta > 1:4952373‑M1/1‑16 (MQ=255) tCACCCGCAGCGCATAgaacgccattttgaattta < 1:5256369‑M1/35‑20 (MQ=255) cACCCGCAGCGCATAgaacgccattttgaatttac < 1:4566036‑M1/35‑21 (MQ=255) cACCCGCAGCGCATAgaacgccattttgaatttac < 1:2761367‑M1/35‑21 (MQ=255) ccccgCAGCGCATAgaacgccattttgaatttacg < 1:4006310‑M1/34‑22 (MQ=255) aCCCGCAGCGCATAgaacgccattttgaatttacg > 1:5194722‑M1/1‑14 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaa < 1:2340608‑M1/35‑24 (MQ=255) ccGCAGCGCATAgaacgccattttgaatttacgaa < 1:7261797‑M1/35‑24 (MQ=255) cGCAGCGCATAgaacgccattttgaatttacgaac > 1:3612794‑M1/1‑11 (MQ=255) aGCGCATAgaacgccattttgaatttacgaacgga < 1:4514116‑M1/35‑28 (MQ=255) aGCGCATAgaacgccattttgaatttacgaacgga < 1:4319170‑M1/35‑28 (MQ=255) aGCGCATAgaacgccattttgaatttacgaacgga > 1:3871106‑M1/1‑8 (MQ=255) gcgcATAgaacgccattttgaatttacgaacggac < 1:1871050‑M1/35‑29 (MQ=255) gcgcATAgaacgccattttgaatttacgaacggac > 1:6326519‑M1/1‑7 (MQ=255) gcgcATAgaacgccattttgaatttacgaacggac > 1:1926519‑M1/1‑7 (MQ=255) cgcATAgaacgccattttgaatttacgaacggacg < 1:540342‑M1/35‑30 (MQ=255) cATAgaacgccattttgaatttacgaacggacgca < 1:5646010‑M1/35‑32 (MQ=255) cATAgaacgccattttgaatttacgaacggacgca > 1:7849053‑M1/1‑4 (MQ=255) cATAgaacgccattttgaatttacgaacggacgca > 1:188514‑M1/1‑4 (MQ=255) cATAgaacgccattttgaatttacgaacggacgca > 1:1886811‑M1/1‑4 (MQ=255) cATAgaacgccattttgaatttacgaacggacgca > 1:213423‑M1/1‑4 (MQ=255) cATAgaacgccattttgaatttacgaacggacgca > 1:2522335‑M1/1‑4 (MQ=255) cATAgaacgccattttgaatttacgaacggacgca > 1:5769323‑M1/1‑4 (MQ=255) aTAgaacgccattttgaatttacgaacggacgcat > 1:2814725‑M1/1‑3 (MQ=255) aTAgaacgccattttgaatttacgaacggacgcat < 1:4146081‑M1/35‑33 (MQ=255) aTAgaacgccattttgaatttacgaacggacgcat < 1:6457166‑M1/35‑33 (MQ=255) tAgaacgccattttgaatttacgaacggacgcatt > 1:1954148‑M1/1‑2 (MQ=255) tAgaacgccattttgaatttacgaacggacgcatt > 1:1106552‑M1/1‑2 (MQ=255) tAgaacgccattttgaatttacgaacggacgcatt < 1:5388647‑M1/35‑34 (MQ=255) tAgaacgccattttgaatttacgaacggacgcatt > 1:1343440‑M1/1‑2 (MQ=255) agaacgccattttgaatttacgaacggacgcatta > 1:831398‑M1/1‑1 (MQ=255) agaacgccattttgaatttacgaacggacgcatta > 1:1191668‑M1/1‑1 (MQ=255) | GCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGG > NC_000913/3110645‑3110713 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |