| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 96 [0] | [0] 95 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 85 (1.290) | 36/62 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453891‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > NC_000913/3469854‑3469887 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC > 1:1740226/1‑35 TTTCTGCTCACGCGCGGCGATATAGAATTCAAACA < 1:1814815/35‑1 TTTCTGCTCACGCGCGGCGATATAGAATTCAAACA < 1:63681/35‑1 TTTCTGCTCACGCGCGGCGATATAGAATTCAAACA > 1:3676933/1‑35 TTCTGCTCACGCGCGGCGATATAGAATTCAAACAT < 1:341247/35‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATT > 1:3954604/1‑35 TCTGCTCACGCGCGGCGATATAGAATTCAAACATT < 1:5840709/35‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:7513953/1‑35 CTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:7143917/1‑35 CTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:5649795/1‑35 CTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:3998105/1‑35 CTGCTCACGCGCGGCGATATAGAATTCAAACATTA < 1:4012385/35‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:4705079/1‑35 CTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:6551740/1‑35 TGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:2197601/35‑1 TGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:5328176/35‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:2683767/1‑35 CTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:4757167/1‑35 CTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:1188964/1‑35 CTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:2868845/1‑35 CTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:278363/1‑35 CTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:1363526/1‑35 CTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:6170636/1‑35 TCACGCGCGGCGATATAGAATTCAAACATTATAAT < 1:2551760/35‑1 TCACGCGCGGCGATATAGAATTCAAACATTATAAT < 1:6785501/35‑1 CACGCGCGGCGATATAGAATTCAAACATTATAATC < 1:3114348/35‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCC > 1:5488597/1‑35 ACGCGCGGCGATATAGAATTCAAACATTATAATCC < 1:1234320/35‑1 CGCGCGGCGATATAGAATTCAAACATTATAATCCC > 1:4508930/1‑35 CGCGCGGCGATATAGAATTCAAACATTATAATCCC > 1:3009794/1‑35 GCGGCGATATAGAATTCAAACATTATAATCCCTTG < 1:6001417/35‑1 GCGGCGATATAGAACTCAAACATTATAATCCCTTG < 1:6960874/35‑1 CGGCGATATAGAATTCAAACATTATAATCCCTTGT < 1:3839433/35‑1 CGGCGATATAGAATTCAAACATTATAATCCCTTGT < 1:5653803/35‑1 CGGCGATATAGAATTCAAACATTATAATCCCTTGT < 1:591822/35‑1 CGGCGATATAGAATTCAAACATTATAATCCCTTGT < 1:6966301/35‑1 CGGCGATATAGAATTCAAACATTATAATCCCTTGT < 1:1163993/35‑1 GCGATATAGAATTCAAACATTATAATCCCTTGTGA < 1:4790686/35‑1 GCGATATAGAATTCAAACATTATAATCCCTTGTGA < 1:2330935/35‑1 CGATATAGAATTCAAACATTATAATCCCTTGTGAC < 1:1570244/35‑1 ATATAGAATTCAAACATTATAATCCCTTGTGACGT > 1:5471168/1‑35 ATATAGAATTCAAACATTATAATCCCTTGTGACGT > 1:4064958/1‑35 ATATAGAATTCAAACATTATAATCCCTTGTGACGT > 1:3714587/1‑35 ATAGAGAATTCAAACATTATAATCCCTTGTGACGT > 1:807197/1‑35 TATAGAATTCAAACATTATAATCCCTTGTGACGTA > 1:755357/1‑35 TATAGAATTCAAACATTATAATCCCTTGTGACGTA < 1:3378968/35‑1 TATAGAATTCAAACATTATAATCCCTTGTGACGTA < 1:3631321/35‑1 TATAGAATTCAAACATTATAATCCCTTGTGACGTA > 1:2012872/1‑35 TATAGAATTCAAACATTATAATCCCTTGTGACGTA < 1:6978479/35‑1 TATAGAATTCAAACATTACAATCCCTTGTGACGTA > 1:2035151/1‑35 ATAGAATTCAAACATTATAATCCCTTGTGACGTAA < 1:3787534/35‑1 ATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:4684303/1‑35 ATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:6352111/1‑35 ATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:3248187/1‑35 ATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:604922/1‑35 TAGAATTCAAACATTATAATCCCTTGTGACGTAAA > 1:7409109/1‑35 TAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:6973579/35‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAA > 1:6932389/1‑35 TAGAATTCAAACATTATAATCCCTTGTGACGTAAA > 1:6849675/1‑35 TAGAATTCAAACATTATAATCCCTTGTGACGTAAA > 1:7530627/1‑35 TAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:3801406/35‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAA > 1:6095796/1‑35 TAGAATTCAAACATTATAATCCCTTGTGACGTAAA > 1:5739891/1‑35 TAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:3239699/35‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:3683124/35‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:3239729/35‑1 AGAATTCAAACATTATAATCCCTTGTGACGTAAAA > 1:431388/1‑35 GAATTCAAACATTATAATCCCTTGTGACGTAAAAA > 1:2501744/1‑35 GAATTCAAACATTATAATCCCTTGTGACGTAAAAA > 1:2610937/1‑35 GAATTCAAACATTATAATCCCTTGTGACGTAAAAA > 1:4353352/1‑35 AATTCAAACATTATAATCCCTTTTGACGTAAAAAC > 1:7103496/1‑35 AATTCAAACATTATAATCCCTTGTGACGTAAAAAC < 1:5445490/35‑1 AATTCAAACATTATAATCCCTTGTGACGTAAAAAC > 1:1926657/1‑35 ATTCAAACATTATAATCCCTTGTGACGTAAAAACT > 1:373055/1‑35 ATTCAAACATTATAATCCCTTGTGACGTAAAAACT > 1:2260282/1‑35 ATTCAAACATTATAATCCCTTGTGACGTAAAAACT < 1:6005034/35‑1 ATTCAAACATTATAATCCCTTGTGACGTAAAAACT > 1:6121451/1‑35 TTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:6399593/1‑35 TCAAACATTATAATCCCTTGTGACGTAAAAACTGC < 1:217600/35‑1 CAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:7344429/1‑35 CAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:1290597/1‑35 CAAACATTATAATCCCTTGTGACGTAAAAACTGCA < 1:1061959/35‑1 CAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:6339742/1‑35 CAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:2244684/1‑35 CAAACATTATAATCCCTTGTGACGTAAAAACTGCA < 1:4931231/35‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAA < 1:3759121/35‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAA > 1:7049721/1‑35 AACATTATAATCCCTTGTGACGTAAAAACTGCAAA > 1:1752853/1‑35 AACATTATAATCCCTTGTGACGTAAAAACTGCAAA > 1:624351/1‑35 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:1622844/1‑35 CATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:2755588/1‑35 CATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:1258812/1‑35 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACA < 1:4371157/35‑1 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAA < 1:6301963/35‑1 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:7175969/1‑35 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:4135228/1‑35 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:2393522/1‑35 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:4719355/1‑35 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAA < 1:3435250/35‑1 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAA < 1:3837952/35‑1 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453891‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > NC_000913/3469854‑3469887 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |