| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 96 [0] | [0] 95 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 85 (1.290) | 36/62 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
CAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > NC_000913/3469820‑3469887 | tctgctcacgcgcggcgatatagaattcaaacatt > 1:3954604‑M2/35‑35 (MQ=255)tctgctcacgcgcggcgatatagaattcaaacatt < 1:5840709‑M2/1‑1 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatta > 1:5649795‑M2/34‑35 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatta > 1:7513953‑M2/34‑35 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatta > 1:7143917‑M2/34‑35 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatta > 1:4705079‑M2/34‑35 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatta > 1:3998105‑M2/34‑35 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatta < 1:4012385‑M2/2‑1 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatta > 1:6551740‑M2/34‑35 (MQ=255) tgctcacgcgcggcgatatagaattcaaacattat < 1:2197601‑M2/3‑1 (MQ=255) tgctcacgcgcggcgatatagaattcaaacattat < 1:5328176‑M2/3‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATaa > 1:6170636‑M2/31‑35 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATaa > 1:2868845‑M2/31‑35 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATaa > 1:278363‑M2/31‑35 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATaa > 1:1188964‑M2/31‑35 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATaa > 1:1363526‑M2/31‑35 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATaa > 1:4757167‑M2/31‑35 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATaa > 1:2683767‑M2/31‑35 (MQ=255) tcacgcgcggcgatatagaattcaaacatTATAAt < 1:6785501‑M2/6‑1 (MQ=255) tcacgcgcggcgatatagaattcaaacatTATAAt < 1:2551760‑M2/6‑1 (MQ=255) cacgcgcggcgatatagaattcaaacatTATAATc < 1:3114348‑M2/7‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATcc > 1:5488597‑M2/28‑35 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATcc < 1:1234320‑M2/8‑1 (MQ=255) cgcgcggcgatatagaattcaaacatTATAATccc > 1:4508930‑M2/27‑35 (MQ=255) cgcgcggcgatatagaattcaaacatTATAATccc > 1:3009794‑M2/27‑35 (MQ=255) gcggcgatatagaattcaaacatTATAATCCCTtg < 1:6001417‑M2/12‑1 (MQ=255) gcggcgatatagaactcaaacatTATAATCCCTtg < 1:6960874‑M2/12‑1 (MQ=255) cggcgatatagaattcaaacatTATAATCCCTtgt < 1:3839433‑M2/13‑1 (MQ=255) cggcgatatagaattcaaacatTATAATCCCTtgt < 1:5653803‑M2/13‑1 (MQ=255) cggcgatatagaattcaaacatTATAATCCCTtgt < 1:591822‑M2/13‑1 (MQ=255) cggcgatatagaattcaaacatTATAATCCCTtgt < 1:6966301‑M2/13‑1 (MQ=255) cggcgatatagaattcaaacatTATAATCCCTtgt < 1:1163993‑M2/13‑1 (MQ=255) gcgatatagaattcaaacatTATAATCCCTTGTGa < 1:4790686‑M2/15‑1 (MQ=255) gcgatatagaattcaaacatTATAATCCCTTGTGa < 1:2330935‑M2/15‑1 (MQ=255) cgatatagaattcaaacatTATAATCCCTTGTGAc < 1:1570244‑M2/16‑1 (MQ=255) atatagaattcaaacatTATAATCCCTTGTGACGt > 1:5471168‑M2/18‑35 (MQ=255) atatagaattcaaacatTATAATCCCTTGTGACGt > 1:4064958‑M2/18‑35 (MQ=255) atatagaattcaaacatTATAATCCCTTGTGACGt > 1:3714587‑M2/18‑35 (MQ=255) atagagaattcaaacatTATAATCCCTTGTGACGt > 1:807197‑M2/18‑35 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTa > 1:755357‑M2/17‑35 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTa < 1:3631321‑M2/19‑1 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTa < 1:6978479‑M2/19‑1 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTa > 1:2012872‑M2/17‑35 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTa < 1:3378968‑M2/19‑1 (MQ=255) tatagaattcaaacatTACAATCCCTTGTGACGTa > 1:2035151‑M2/17‑35 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTaa > 1:604922‑M2/16‑35 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTaa < 1:3787534‑M2/20‑1 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTaa > 1:6352111‑M2/16‑35 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTaa > 1:3248187‑M2/16‑35 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTaa > 1:4684303‑M2/16‑35 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTaaa < 1:3239699‑M2/21‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTaaa < 1:3801406‑M2/21‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTaaa > 1:6849675‑M2/15‑35 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTaaa < 1:6973579‑M2/21‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTaaa > 1:5739891‑M2/15‑35 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTaaa > 1:6932389‑M2/15‑35 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTaaa > 1:6095796‑M2/15‑35 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTaaa < 1:3239729‑M2/21‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTaaa > 1:7409109‑M2/15‑35 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTaaa > 1:7530627‑M2/15‑35 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTaaa < 1:3683124‑M2/21‑1 (MQ=255) agaattcaaacatTATAATCCCTTGTGACGTaaaa > 1:431388‑M2/14‑35 (MQ=255) gaattcaaacatTATAATCCCTTGTGACGTaaaaa > 1:2610937‑M2/13‑35 (MQ=255) gaattcaaacatTATAATCCCTTGTGACGTaaaaa > 1:2501744‑M2/13‑35 (MQ=255) gaattcaaacatTATAATCCCTTGTGACGTaaaaa > 1:4353352‑M2/13‑35 (MQ=255) aattcaaacatTATAATCCCTTTTGACGTAAAAAc > 1:7103496‑M2/12‑35 (MQ=255) aattcaaacatTATAATCCCTTGTGACGTAAAAAc > 1:1926657‑M2/12‑35 (MQ=255) aattcaaacatTATAATCCCTTGTGACGTAAAAAc < 1:5445490‑M2/24‑1 (MQ=255) attcaaacatTATAATCCCTTGTGACGTAAAAACt < 1:6005034‑M2/25‑1 (MQ=255) attcaaacatTATAATCCCTTGTGACGTAAAAACt > 1:6121451‑M2/11‑35 (MQ=255) attcaaacatTATAATCCCTTGTGACGTAAAAACt > 1:2260282‑M2/11‑35 (MQ=255) attcaaacatTATAATCCCTTGTGACGTAAAAACt > 1:373055‑M2/11‑35 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTg > 1:6399593‑M2/10‑35 (MQ=255) tcaaacatTATAATCCCTTGTGACGTAAAAACTGc < 1:217600‑M2/27‑1 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCa < 1:1061959‑M2/28‑1 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCa > 1:1290597‑M2/8‑35 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCa > 1:7344429‑M2/8‑35 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCa > 1:6339742‑M2/8‑35 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCa > 1:2244684‑M2/8‑35 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCa < 1:4931231‑M2/28‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCaa < 1:3759121‑M2/29‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCaa > 1:7049721‑M2/7‑35 (MQ=255) aacatTATAATCCCTTGTGACGTAAAAACTGCaaa > 1:624351‑M2/6‑35 (MQ=255) aacatTATAATCCCTTGTGACGTAAAAACTGCaaa > 1:1752853‑M2/6‑35 (MQ=255) acatTATAATCCCTTGTGACGTAAAAACTGCaaaa > 1:1622844‑M2/5‑35 (MQ=255) catTATAATCCCTTGTGACGTAAAAACTGCAAAAc > 1:2755588‑M2/4‑35 (MQ=255) catTATAATCCCTTGTGACGTAAAAACTGCAAAAc > 1:1258812‑M2/4‑35 (MQ=255) atTATAATCCCTTGTGACGTAAAAACTGCAAAACa < 1:4371157‑M2/33‑1 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACaa < 1:3837952‑M2/34‑1 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACaa > 1:4135228‑M2/2‑35 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACaa < 1:3435250‑M2/34‑1 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACaa > 1:7175969‑M2/2‑35 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACaa > 1:4719355‑M2/2‑35 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACaa > 1:2393522‑M2/2‑35 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACaa < 1:6301963‑M2/34‑1 (MQ=255) | CAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > NC_000913/3469820‑3469887 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |