| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 96 [0] | [0] 95 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 85 (1.290) | 36/62 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
TTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAAT > NC_000913/3453893‑3453961 | ttCTGCTCACGCGCGGCGATATAGAATTCAAACAT < 1:341247‑M1/35‑1 (MQ=255) tCTGCTCACGCGCGGCGATATAGAATTCAAACATt > 1:3954604‑M1/1‑34 (MQ=255) tCTGCTCACGCGCGGCGATATAGAATTCAAACATt < 1:5840709‑M1/35‑2 (MQ=255) cTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:5649795‑M1/1‑33 (MQ=255) cTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:4705079‑M1/1‑33 (MQ=255) cTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:7513953‑M1/1‑33 (MQ=255) cTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:7143917‑M1/1‑33 (MQ=255) cTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:3998105‑M1/1‑33 (MQ=255) cTGCTCACGCGCGGCGATATAGAATTCAAACATta < 1:4012385‑M1/35‑3 (MQ=255) cTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:6551740‑M1/1‑33 (MQ=255) tGCTCACGCGCGGCGATATAGAATTCAAACATtat < 1:5328176‑M1/35‑4 (MQ=255) tGCTCACGCGCGGCGATATAGAATTCAAACATtat < 1:2197601‑M1/35‑4 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:6170636‑M1/1‑30 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:1363526‑M1/1‑30 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:1188964‑M1/1‑30 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:2683767‑M1/1‑30 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:4757167‑M1/1‑30 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:278363‑M1/1‑30 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:2868845‑M1/1‑30 (MQ=255) tCACGCGCGGCGATATAGAATTCAAACATtataat < 1:6785501‑M1/35‑7 (MQ=255) tCACGCGCGGCGATATAGAATTCAAACATtataat < 1:2551760‑M1/35‑7 (MQ=255) cACGCGCGGCGATATAGAATTCAAACATtataatc < 1:3114348‑M1/35‑8 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcc < 1:1234320‑M1/35‑9 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcc > 1:5488597‑M1/1‑27 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatccc > 1:4508930‑M1/1‑26 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatccc > 1:3009794‑M1/1‑26 (MQ=255) gcggcgATATAGAATTCAAACATtataatcccttg < 1:6001417‑M1/35‑13 (MQ=255) gcggcgATATAGAACTCAAACATtataatcccttg < 1:6960874‑M1/35‑13 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgt < 1:3839433‑M1/35‑14 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgt < 1:5653803‑M1/35‑14 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgt < 1:591822‑M1/35‑14 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgt < 1:6966301‑M1/35‑14 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgt < 1:1163993‑M1/35‑14 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtga < 1:4790686‑M1/35‑16 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtga < 1:2330935‑M1/35‑16 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgac < 1:1570244‑M1/35‑17 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgt > 1:5471168‑M1/1‑17 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgt > 1:4064958‑M1/1‑17 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgt > 1:3714587‑M1/1‑17 (MQ=255) atagAGAATTCAAACATtataatcccttgtgacgt > 1:807197‑M1/1‑17 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgta > 1:755357‑M1/1‑16 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgta < 1:3631321‑M1/35‑20 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgta < 1:6978479‑M1/35‑20 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgta > 1:2012872‑M1/1‑16 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgta < 1:3378968‑M1/35‑20 (MQ=255) tataGAATTCAAACATtacaatcccttgtgacgta > 1:2035151‑M1/1‑16 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaa > 1:604922‑M1/1‑15 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaa < 1:3787534‑M1/35‑21 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaa > 1:6352111‑M1/1‑15 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaa > 1:3248187‑M1/1‑15 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaa > 1:4684303‑M1/1‑15 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaa < 1:3239699‑M1/35‑22 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaa < 1:3801406‑M1/35‑22 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaa > 1:6849675‑M1/1‑14 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaa < 1:6973579‑M1/35‑22 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaa > 1:5739891‑M1/1‑14 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaa > 1:6932389‑M1/1‑14 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaa > 1:6095796‑M1/1‑14 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaa < 1:3239729‑M1/35‑22 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaa > 1:7409109‑M1/1‑14 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaa > 1:7530627‑M1/1‑14 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaa < 1:3683124‑M1/35‑22 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaa > 1:431388‑M1/1‑13 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaa > 1:2610937‑M1/1‑12 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaa > 1:2501744‑M1/1‑12 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaa > 1:4353352‑M1/1‑12 (MQ=255) aaTTCAAACATtataatcccttttgacgtaaaaac > 1:7103496‑M1/1‑11 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaac > 1:1926657‑M1/1‑11 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaac < 1:5445490‑M1/35‑25 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaact < 1:6005034‑M1/35‑26 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaact > 1:6121451‑M1/1‑10 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaact > 1:2260282‑M1/1‑10 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaact > 1:373055‑M1/1‑10 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactg > 1:6399593‑M1/1‑9 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgc < 1:217600‑M1/35‑28 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgca < 1:1061959‑M1/35‑29 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgca > 1:1290597‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgca > 1:7344429‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgca > 1:6339742‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgca > 1:2244684‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgca < 1:4931231‑M1/35‑29 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaa < 1:3759121‑M1/35‑30 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaa > 1:7049721‑M1/1‑6 (MQ=255) aaCATtataatcccttgtgacgtaaaaactgcaaa > 1:624351‑M1/1‑5 (MQ=255) aaCATtataatcccttgtgacgtaaaaactgcaaa > 1:1752853‑M1/1‑5 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaa > 1:1622844‑M1/1‑4 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaac > 1:2755588‑M1/1‑3 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaac > 1:1258812‑M1/1‑3 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaaca < 1:4371157‑M1/35‑34 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaa < 1:3837952‑M1/35‑35 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaa > 1:4135228‑M1/1‑1 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaa < 1:3435250‑M1/35‑35 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaa > 1:7175969‑M1/1‑1 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaa > 1:4719355‑M1/1‑1 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaa > 1:2393522‑M1/1‑1 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaa < 1:6301963‑M1/35‑35 (MQ=255) | TTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAAT > NC_000913/3453893‑3453961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |