| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 134 [0] | [0] 136 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 120 (1.710) | 56/66 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 134 total aligned reads displayed.
TCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496641‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAA > NC_000913/4549712‑4549745 TCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:4325544/35‑1TCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:3404104/35‑1TCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:2064170/35‑1 CGATAATGCTTGTACCAACAGGGAGGGAATACGAG > 1:4880003/1‑35 CGATAATGCTTGTACCAACAGGGAGGGAATACGAG < 1:3861431/35‑1 CGATAATGCTTGTACCAACAGGGAGGGAATACGAG < 1:2178047/35‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGA > 1:4825060/1‑35 GATAATGCTTGTACCAACAGGGAGGGAATACGAGA > 1:5529743/1‑35 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAA > 1:1465942/1‑35 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAA > 1:7324235/1‑35 aAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 1:1463061/2‑35 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 1:7265200/1‑35 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 1:4746448/1‑35 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 1:5890228/1‑35 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAA < 1:6115650/35‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 1:775821/1‑35 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 1:1031430/1‑35 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 1:835876/1‑35 AATGCTTGTACCAACAGGGAGGGAATACGAGAAAT < 1:7654867/35‑1 AATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:4013400/1‑35 AATGCTTGTACCAACAGGGAGGGAATACGAGAAAT < 1:6977117/35‑1 AATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:5186432/1‑35 AATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:7053710/1‑35 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATC > 1:5229487/1‑35 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:6469966/35‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATC > 1:2176620/1‑35 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATC > 1:3759443/1‑35 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:7708375/35‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATC > 1:5080940/1‑35 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:2877971/35‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATC > 1:4250414/1‑35 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:2740636/1‑35 GCTTGTACCAACAGGGAGGGAATACGAGAAATCAC < 1:3312164/35‑1 CTTGTACCAACAGGGAGGGAATACGAGAAATCACA > 1:1274445/1‑35 CTTGTACCAACAGGGAGGGAATACGAGAAATCACA > 1:5053072/1‑35 TTGTACCAACAGGGAGGGAATACGAGAAATCACAG > 1:7895001/1‑35 TTGTACCAACAGGGAGGGAATACGAGAAATCACAG < 1:2051151/35‑1 TGTACCAACAGGGAGGGAATACGAGAAATCACAGG > 1:1827348/1‑35 GTACCAACAGGGAGGGAATACGAGAAATCACAGGA < 1:3061784/35‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:2816681/1‑35 GTACCAACAGGGAGGGAATACGAGAAATCACAGGA < 1:1943814/35‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:7581384/1‑35 TACCAACAGGGAGGGAATACGAGAAATCACAGGAC > 1:5916457/1‑35 TACCAACAGGGAGGGAATACGAGAAATCACAGGAC > 1:887872/1‑35 ACCAACAGGGAGGGAATACGAGAAATCACAGGACA > 1:1459355/1‑35 CCAACAGGGAGGGAATACGAGAAATCACAGGACAT < 1:5655774/35‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACAT > 1:7181637/1‑35 CCAACAGGGAGGGAATACGAGAAATCACAGGACAT < 1:2929611/35‑1 AACAGGGAGGGAATACGAGAAATCACAGGACATTG > 1:5046481/1‑35 ACAGGGAGGGAATACGAGAAATCACAGGACATTGC < 1:1028375/35‑1 ACAGGGAGGGAATACGAGAAATCACAGGACATTGC < 1:1031069/35‑1 ACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:5235188/1‑35 CAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 1:6397575/35‑1 CAGGGAGGGAATACGAGAAATCACAGGACATTGCT > 1:876207/1‑35 CAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 1:6137677/35‑1 CAGGGAGGGAATACGAGAAATCACAGGACATTGCT > 1:5642146/1‑35 AGGGAGGGAATACGAGAAATCACAGGACATTGCTA > 1:4995321/1‑35 AGGGAGGGAATACGAGAAATCACAGGACATTGCTA < 1:6787743/35‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAA > 1:7327802/1‑35 GGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:5516222/35‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:30275/35‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:5968418/35‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:7541128/35‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:4773651/35‑1 GGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:7273076/35‑1 GGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:6810289/35‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATG > 1:5806311/1‑35 GAGGGAATACGAGAAATCACAGGACATTGCTAATG > 1:5969275/1‑35 GAGGGAATACGAGAAATCACAGGACATTGCTAATG < 1:628289/35‑1 AGGGAATACGAGAAATCACAGGACATTGCTAATGC < 1:2787404/35‑1 AGGGAATACGAGAAATCACAGGACATTGCTAATGC > 1:4393380/1‑35 GGGAATACGAGAAATCACAGGACATTGCTAATGCT < 1:3178344/35‑1 GGAATACGAGAAATCACAGGACATTGCTAATGCTG > 1:365642/1‑35 GGAATACGAGAAATCACAGGACATTGCTAATGCTG > 1:3991042/1‑35 GGAATACGAGAAATCACAGGACATTGCTAATGCTG < 1:4532276/35‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:1323876/1‑35 GAATACGAGAAATCACAGGACATTGCTAATGCTGG < 1:1478608/35‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGG < 1:2296474/35‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGG < 1:3074296/35‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:7498895/1‑35 GAATACGAGAAATCACAGGACATTGCTAATGCTGG < 1:4395762/35‑1 AATACGAGAAATCACAGGACATTGCTAATGCTGGa > 1:6326921/1‑34 AATACGAGAAATCACAGGACATTGCTAATGCTGGT > 1:7842121/1‑35 AATACGAGAAATCACAGGACATTGCTAATGCTGGT > 1:6178570/1‑35 ATACGAGAAATCACAGGACATTGCTAATGCTGGTA < 1:1858545/35‑1 TACGAGAAATCACAGGACATTGCTAATGCTGGTAC > 1:6435117/1‑35 TACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:2714949/35‑1 ACGAGAAATCACAGGACATTGCTAATGCTGGTACG < 1:4382462/35‑1 ACGAGAAATCACAGGACATTGCTAATGCTGGTACG < 1:6910909/35‑1 ACGAGAAATCACAGGACATTGCTAATGCTGGTACG < 1:628612/35‑1 CGAGAAATCACAGGACATTGCTAATGCTGGTACGC > 1:1693406/1‑35 GAGAAATCACAGGACATTGCTAATGCTGGTACGCA < 1:4527815/35‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAA < 1:5646384/35‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAA < 1:449568/35‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAA < 1:5853736/35‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:532115/1‑35 AGAAATCACAGGACATTGCTAATGCTGGTACGCAA < 1:4091623/35‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:669398/1‑35 AGAAATCACAGGACATTGCTAATGCTGGTACGCAA < 1:6576553/35‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:4547936/1‑35 TCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496641‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAA > NC_000913/4549712‑4549745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |