| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 134 [0] | [0] 136 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 120 (1.710) | 56/66 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 134 total aligned reads displayed.
TCGATAATGCTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAA > NC_000913/4496641‑4496709 | tCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:4325544‑M1/35‑1 (MQ=255)tCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:3404104‑M1/35‑1 (MQ=255)tCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:2064170‑M1/35‑1 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAg > 1:4880003‑M1/1‑34 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAg < 1:3861431‑M1/35‑2 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAg < 1:2178047‑M1/35‑2 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAga > 1:4825060‑M1/1‑33 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAga > 1:5529743‑M1/1‑33 (MQ=255) aTAATGCTTGTACCAACAGGGAGGGAATACGAgaa > 1:1465942‑M1/1‑32 (MQ=255) aTAATGCTTGTACCAACAGGGAGGGAATACGAgaa > 1:7324235‑M1/1‑32 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaa > 1:7265200‑M1/1‑31 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaa > 1:4746448‑M1/1‑31 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaa > 1:5890228‑M1/1‑31 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaa < 1:6115650‑M1/35‑5 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaa > 1:1031430‑M1/1‑31 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaa > 1:835876‑M1/1‑31 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaa > 1:775821‑M1/1‑31 (MQ=255) aaatGCTTGTACCAACAGGGAGGGAATACGAgaaa > 1:1463061‑M1/2‑31 (MQ=255) aaTGCTTGTACCAACAGGGAGGGAATACGAgaaat < 1:7654867‑M1/35‑6 (MQ=255) aaTGCTTGTACCAACAGGGAGGGAATACGAgaaat > 1:5186432‑M1/1‑30 (MQ=255) aaTGCTTGTACCAACAGGGAGGGAATACGAgaaat > 1:4013400‑M1/1‑30 (MQ=255) aaTGCTTGTACCAACAGGGAGGGAATACGAgaaat > 1:7053710‑M1/1‑30 (MQ=255) aaTGCTTGTACCAACAGGGAGGGAATACGAgaaat < 1:6977117‑M1/35‑6 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatc > 1:2176620‑M1/1‑29 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatc > 1:5080940‑M1/1‑29 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatc > 1:5229487‑M1/1‑29 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatc > 1:4250414‑M1/1‑29 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatc < 1:6469966‑M1/35‑7 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatc > 1:3759443‑M1/1‑29 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatc < 1:2877971‑M1/35‑7 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatc < 1:7708375‑M1/35‑7 (MQ=255) tGCTTGTACCAACAGGGAGGGAATACGAgaaatca > 1:2740636‑M1/1‑28 (MQ=255) gCTTGTACCAACAGGGAGGGAATACGAgaaatcac < 1:3312164‑M1/35‑9 (MQ=255) cTTGTACCAACAGGGAGGGAATACGAgaaatcaca > 1:5053072‑M1/1‑26 (MQ=255) cTTGTACCAACAGGGAGGGAATACGAgaaatcaca > 1:1274445‑M1/1‑26 (MQ=255) ttGTACCAACAGGGAGGGAATACGAgaaatcacag < 1:2051151‑M1/35‑11 (MQ=255) ttGTACCAACAGGGAGGGAATACGAgaaatcacag > 1:7895001‑M1/1‑25 (MQ=255) tGTACCAACAGGGAGGGAATACGAgaaatcacagg > 1:1827348‑M1/1‑24 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacagga < 1:3061784‑M1/35‑13 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacagga > 1:2816681‑M1/1‑23 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacagga < 1:1943814‑M1/35‑13 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacagga > 1:7581384‑M1/1‑23 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggac > 1:887872‑M1/1‑22 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggac > 1:5916457‑M1/1‑22 (MQ=255) aCCAACAGGGAGGGAATACGAgaaatcacaggaca > 1:1459355‑M1/1‑21 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacat < 1:5655774‑M1/35‑16 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacat < 1:2929611‑M1/35‑16 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacat > 1:7181637‑M1/1‑20 (MQ=255) aaCAGGGAGGGAATACGAgaaatcacaggacattg > 1:5046481‑M1/1‑18 (MQ=255) aCAGGGAGGGAATACGAgaaatcacaggacattgc < 1:1028375‑M1/35‑19 (MQ=255) aCAGGGAGGGAATACGAgaaatcacaggacattgc < 1:1031069‑M1/35‑19 (MQ=255) aCAGGGAGGGAATACGAgaaatcacaggacattgc > 1:5235188‑M1/1‑17 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgct < 1:6397575‑M1/35‑20 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgct > 1:876207‑M1/1‑16 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgct < 1:6137677‑M1/35‑20 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgct > 1:5642146‑M1/1‑16 (MQ=255) agggagggAATACGAgaaatcacaggacattgcta > 1:4995321‑M1/1‑15 (MQ=255) agggagggAATACGAgaaatcacaggacattgcta < 1:6787743‑M1/35‑21 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaa > 1:7327802‑M1/1‑14 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaa < 1:5516222‑M1/35‑22 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaa < 1:30275‑M1/35‑22 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaa < 1:5968418‑M1/35‑22 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaa < 1:7541128‑M1/35‑22 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaa < 1:4773651‑M1/35‑22 (MQ=255) ggagggaATACGAgaaatcacaggacattgctaat < 1:7273076‑M1/35‑23 (MQ=255) ggagggaATACGAgaaatcacaggacattgctaat < 1:6810289‑M1/35‑23 (MQ=255) gagggaATACGAgaaatcacaggacattgctaatg > 1:5806311‑M1/1‑12 (MQ=255) gagggaATACGAgaaatcacaggacattgctaatg > 1:5969275‑M1/1‑12 (MQ=255) gagggaATACGAgaaatcacaggacattgctaatg < 1:628289‑M1/35‑24 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgc < 1:2787404‑M1/35‑25 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgc > 1:4393380‑M1/1‑11 (MQ=255) gggaATACGAgaaatcacaggacattgctaatgct < 1:3178344‑M1/35‑26 (MQ=255) ggaATACGAgaaatcacaggacattgctaatgctg > 1:365642‑M1/1‑9 (MQ=255) ggaATACGAgaaatcacaggacattgctaatgctg > 1:3991042‑M1/1‑9 (MQ=255) ggaATACGAgaaatcacaggacattgctaatgctg < 1:4532276‑M1/35‑27 (MQ=255) gaATACGAgaaatcacaggacattgctaatgctgg > 1:1323876‑M1/1‑8 (MQ=255) gaATACGAgaaatcacaggacattgctaatgctgg < 1:1478608‑M1/35‑28 (MQ=255) gaATACGAgaaatcacaggacattgctaatgctgg < 1:2296474‑M1/35‑28 (MQ=255) gaATACGAgaaatcacaggacattgctaatgctgg < 1:3074296‑M1/35‑28 (MQ=255) gaATACGAgaaatcacaggacattgctaatgctgg > 1:7498895‑M1/1‑8 (MQ=255) gaATACGAgaaatcacaggacattgctaatgctgg < 1:4395762‑M1/35‑28 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggt > 1:7842121‑M1/1‑7 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggt > 1:6178570‑M1/1‑7 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctgga > 1:6326921‑M1/1‑7 (MQ=255) aTACGAgaaatcacaggacattgctaatgctggta < 1:1858545‑M1/35‑30 (MQ=255) tACGAgaaatcacaggacattgctaatgctggtac > 1:6435117‑M1/1‑5 (MQ=255) tACGAgaaatcacaggacattgctaatgctggtac < 1:2714949‑M1/35‑31 (MQ=255) aCGAgaaatcacaggacattgctaatgctggtacg < 1:4382462‑M1/35‑32 (MQ=255) aCGAgaaatcacaggacattgctaatgctggtacg < 1:6910909‑M1/35‑32 (MQ=255) aCGAgaaatcacaggacattgctaatgctggtacg < 1:628612‑M1/35‑32 (MQ=255) cGAgaaatcacaggacattgctaatgctggtacgc > 1:1693406‑M1/1‑3 (MQ=255) gagaaatcacaggacattgctaatgctggtacgca < 1:4527815‑M1/35‑34 (MQ=255) agaaatcacaggacattgctaatgctggtacgcaa < 1:5646384‑M1/35‑35 (MQ=255) agaaatcacaggacattgctaatgctggtacgcaa < 1:449568‑M1/35‑35 (MQ=255) agaaatcacaggacattgctaatgctggtacgcaa < 1:5853736‑M1/35‑35 (MQ=255) agaaatcacaggacattgctaatgctggtacgcaa > 1:532115‑M1/1‑1 (MQ=255) agaaatcacaggacattgctaatgctggtacgcaa < 1:4091623‑M1/35‑35 (MQ=255) agaaatcacaggacattgctaatgctggtacgcaa > 1:669398‑M1/1‑1 (MQ=255) agaaatcacaggacattgctaatgctggtacgcaa < 1:6576553‑M1/35‑35 (MQ=255) agaaatcacaggacattgctaatgctggtacgcaa > 1:4547936‑M1/1‑1 (MQ=255) | TCGATAATGCTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAA > NC_000913/4496641‑4496709 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |