| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 134 [0] | [0] 136 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 120 (1.710) | 56/66 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 136 total aligned reads displayed.
TCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAAT > NC_000913/4549678‑4549746 | cgataatgcttgtaccaacagggagggaatacgag < 1:3861431‑M2/1‑1 (MQ=255)cgataatgcttgtaccaacagggagggaatacgag < 1:2178047‑M2/1‑1 (MQ=255)cgataatgcttgtaccaacagggagggaatacgag > 1:4880003‑M2/35‑35 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGaa > 1:1465942‑M2/33‑35 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGaa > 1:7324235‑M2/33‑35 (MQ=255) taatgcttgtaccaacagggagggaatacgaGaaa > 1:4746448‑M2/32‑35 (MQ=255) taatgcttgtaccaacagggagggaatacgaGaaa > 1:5890228‑M2/32‑35 (MQ=255) taatgcttgtaccaacagggagggaatacgaGaaa > 1:5890320‑M2/32‑35 (MQ=255) taatgcttgtaccaacagggagggaatacgaGaaa > 1:5548146‑M2/32‑35 (MQ=255) taatgcttgtaccaacagggagggaatacgaGaaa < 1:6115650‑M2/4‑1 (MQ=255) taatgcttgtaccaacagggagggaatacgaGaaa > 1:7265200‑M2/32‑35 (MQ=255) taatgcttgtaccaacagggagggaatacgaGaaa > 1:1031430‑M2/32‑35 (MQ=255) taatgcttgtaccaacagggagggaatacgaGaaa > 1:775821‑M2/32‑35 (MQ=255) taatgcttgtaccaacagggagggaatacgaGaaa > 1:835876‑M2/32‑35 (MQ=255) taatgcttgtaccaacagggagggaatacgaGaaa < 1:4872013‑M2/4‑1 (MQ=255) aaatgcttgtaccaacagggagggaatacgaGaaa > 1:1463061‑M2/32‑35 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAAt > 1:4013400‑M2/31‑35 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAAt < 1:7654867‑M2/5‑1 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAAt > 1:5186432‑M2/31‑35 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAAt < 1:6977117‑M2/5‑1 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAAt < 1:2990156‑M2/5‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATc < 1:7708375‑M2/6‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATc > 1:3759443‑M2/30‑35 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATc < 1:6469966‑M2/6‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATc > 1:4250414‑M2/30‑35 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATc > 1:5229487‑M2/30‑35 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATc > 1:2176620‑M2/30‑35 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATcac < 1:3312164‑M2/8‑1 (MQ=255) cttgtaccaacagggagggaatacgaGAAATcaca > 1:5053072‑M2/27‑35 (MQ=255) cttgtaccaacagggagggaatacgaGAAATcaca > 1:1274445‑M2/27‑35 (MQ=255) ttgtaccaacagggagggaatacgaGAAATCACAg > 1:7895001‑M2/26‑35 (MQ=255) tgtaccaacagggagggaatacgaGAAATCACAgg > 1:1827348‑M2/25‑35 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGa < 1:3061784‑M2/12‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGa > 1:2816681‑M2/24‑35 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGa > 1:7581384‑M2/24‑35 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGa < 1:1943814‑M2/12‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGAc > 1:887872‑M2/23‑35 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGAc > 1:5916457‑M2/23‑35 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGAc > 1:3150990‑M2/23‑35 (MQ=255) accaacagggagggaatacgaGAAATCACAGGACa > 1:1459355‑M2/22‑35 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACAt < 1:2929611‑M2/15‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACAt > 1:7181637‑M2/21‑35 (MQ=255) aacagggagggaatacgaGAAATCACAGGACATTg < 1:2527434‑M2/17‑1 (MQ=255) aacagggagggaatacgaGAAATCACAGGACATTg > 1:5046481‑M2/19‑35 (MQ=255) aacagggagggaatacgaGAAATCACAGGACATTg < 1:18653‑M2/17‑1 (MQ=255) acagggagggaatacgaGAAATCACAGGACATTGc < 1:1031069‑M2/18‑1 (MQ=255) acagggagggaatacgaGAAATCACAGGACATTGc < 1:1028375‑M2/18‑1 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCt > 1:876207‑M2/17‑35 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCt > 1:5642146‑M2/17‑35 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTa < 1:6787743‑M2/20‑1 (MQ=255) gggagggaatacgaGAAATCACAGGACATTGCTaa < 1:4773651‑M2/21‑1 (MQ=255) gggagggaatacgaGAAATCACAGGACATTGCTaa < 1:7541128‑M2/21‑1 (MQ=255) gggagggaatacgaGAAATCACAGGACATTGCTaa > 1:7327802‑M2/15‑35 (MQ=255) gggagggaatacgaGAAATCACAGGACATTGCTaa < 1:5516222‑M2/21‑1 (MQ=255) gggagggaatacgaGAAATCACAGGACATTGCTaa < 1:438445‑M2/21‑1 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAAt < 1:6263732‑M2/22‑1 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATg > 1:6496031‑M2/13‑35 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATg < 1:5086752‑M2/23‑1 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATg < 1:628289‑M2/23‑1 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATg > 1:5969275‑M2/13‑35 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATg > 1:5806311‑M2/13‑35 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGc > 1:7265973‑M2/12‑35 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGc < 1:2787404‑M2/24‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGc > 1:4393380‑M2/12‑35 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTg > 1:3991042‑M2/10‑35 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTg > 1:365642‑M2/10‑35 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTg > 1:7029141‑M2/10‑35 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTg < 1:4532276‑M2/26‑1 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTg > 1:2168070‑M2/10‑35 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTgg < 1:3074296‑M2/27‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:1323876‑M2/9‑35 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:6086795‑M2/9‑35 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTgg < 1:4395762‑M2/27‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:503443‑M2/9‑35 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:7498895‑M2/9‑35 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTgg < 1:1478608‑M2/27‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCtgga > 1:6326921‑M2/8‑34 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGt < 1:4109150‑M2/28‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGt > 1:6178570‑M2/8‑35 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGt > 1:7842121‑M2/8‑35 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTa > 1:6394510‑M2/7‑35 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTAc > 1:6435117‑M2/6‑35 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTAc < 1:2714949‑M2/30‑1 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTAc > 1:4513982‑M2/6‑35 (MQ=255) acgaGAAATCACAGGACATTGCTAATGCTGGTACg < 1:6910909‑M2/31‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGc > 1:1693406‑M2/4‑35 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGc > 1:4571412‑M2/4‑35 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGc < 1:5772440‑M2/32‑1 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCa < 1:4527815‑M2/33‑1 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCa > 1:5254804‑M2/3‑35 (MQ=255) aGAAATCACAGGACATTGCTAATGCTGGTACGCaa < 1:280678‑M2/34‑1 (MQ=255) aGAAATCACAGGACATTGCTAATGCTGGTACGCaa < 1:6802185‑M2/34‑1 (MQ=255) aGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:669398‑M2/2‑35 (MQ=255) aGAAATCACAGGACATTGCTAATGCTGGTACGCaa < 1:5646384‑M2/34‑1 (MQ=255) aGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:532115‑M2/2‑35 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAat < 1:2608026/35‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAat > 1:3262968/1‑35 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAat < 1:1699539/35‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAat < 1:3365907/35‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAat < 1:401877/35‑1 (MQ=255) | TCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAAT > NC_000913/4549678‑4549746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |