Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,165,151 Δ12,060 bp yegP–gatY 17 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2165151 2177210 12060 119 [0] [0] 125 yegP–gatY yegP,yegQ,cyaR,ogrK,yegZ,yegR,yegS,gatR,insE‑5,insF‑5,gatR,gatD,gatC,gatB,gatA,gatZ,gatY

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 21651500 (0.000)119 (1.650) 50/68 0.0 100% intergenic (+152/‑39) baeR/yegP DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP
?NC_000913 2177211 = 0 (0.000)intergenic (‑7/+301) gatY/fbaB tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I

Only 100 of 119 total aligned reads displayed.

GCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGT  >  NC_000913/2165117‑2165184
                                 |                                  
gCTCATACTTTAATCGGTAAACAGCACCTTTAGAa                                   >  1:4930455‑M1/1‑34 (MQ=255)
gCTCATACTTTAATCGGTAAACAGCACCTTTAGAa                                   <  1:4275680‑M1/35‑2 (MQ=255)
gCTCATACTTTAATCGGTAAACAGCACCTTTAGAa                                   >  1:2689561‑M1/1‑34 (MQ=255)
 cTCATACTTTAATCGGTAAACAGCACCTTTAGAat                                  <  1:5302243‑M1/35‑3 (MQ=255)
 cTCATACTTTAATCGGTAAACAGCACCTTTAGAat                                  >  1:2290539‑M1/1‑33 (MQ=255)
 cTCATACTTTAATCGGTAAACAGCACCTTTAGAat                                  >  1:7523593‑M1/1‑33 (MQ=255)
 cTCATACTTTAATCGGTAAACAGCACCTTTAGAat                                  <  1:4172699‑M1/35‑3 (MQ=255)
 cTCATACTTTAATCGGTAAACAGCACCTTTAGAat                                  <  1:7290294‑M1/35‑3 (MQ=255)
 cTCATACTTTAATCGGTAAACAGCACCTTTAGAat                                  >  1:2732908‑M1/1‑33 (MQ=255)
 cTCATACTTTAATCGGTAAACAGCACCTTTAGAat                                  >  1:3331127‑M1/1‑33 (MQ=255)
  tCATACTTTAATCGGTAAACAGCACCTTTAGAatc                                 <  1:6468077‑M1/35‑4 (MQ=255)
   cATACTTTAATCGGTAAACAGCACCTTTAGAatcc                                <  1:5199180‑M1/35‑5 (MQ=255)
    aTACTTTAATCGGTAAACAGCACCTTTAGAatcct                               >  1:4060171‑M1/1‑30 (MQ=255)
    aTACTTTAATCGGTAAACAGCACCTTTAGAatcct                               >  1:6899790‑M1/1‑30 (MQ=255)
     tACTTTAATCGGTAAACAGCACCTTTAGAatcctg                              >  1:2405998‑M1/1‑29 (MQ=255)
      aCTTTAATCGGTAAACAGCACCTTTAGAatcctgt                             <  1:411635‑M1/35‑8 (MQ=255)
       cTTTAATCGGTAAACAGCACCTTTAGAatcctgtc                            >  1:3120967‑M1/1‑27 (MQ=255)
       cTTTAATCGGTAAACAGCACCTTTAGAatcctgtc                            >  1:5495066‑M1/1‑27 (MQ=255)
        tttAATCGGTAAACAGCACCTTTAGAatcctgtcg                           <  1:3904737‑M1/35‑10 (MQ=255)
        tttAATCGGTAAACAGCACCTTTAGAatcctgtcg                           <  1:1100965‑M1/35‑10 (MQ=255)
        tttAATCGGTAAACAGCACCTTTAGAatcctgtcg                           <  1:5622040‑M1/35‑10 (MQ=255)
         ttAATCGGTAAACAGCACCTTTAGAatcctgtcgt                          >  1:5276776‑M1/1‑25 (MQ=255)
         ttAATCGGTAAACAGCACCTTTAGAatcctgtcgt                          >  1:5276816‑M1/1‑25 (MQ=255)
          tAATCGGTAAACAGCACCTTTAGAatcctgtcgtt                         >  1:2316547‑M1/1‑24 (MQ=255)
          tAATCGGTAAACAGCACCTTTAGAatcctgtcgtt                         >  1:5330524‑M1/1‑24 (MQ=255)
          tAATCGGTAAACAGCACCTTTAGAatcctgtcgtt                         >  1:3800228‑M1/1‑24 (MQ=255)
           aaTCGGTAAACAGCGCCTTTAGAatcctgtcgttt                        <  1:3581888‑M1/35‑13 (MQ=255)
           aaTCGGTAAACAGCACCTTTAGAatcctgtcgttt                        <  1:7145825‑M1/35‑13 (MQ=255)
           aaTCGGTAAACAGCACCTTTAGAatcctgtcgttt                        >  1:7643822‑M1/1‑23 (MQ=255)
           aaTCGGTAAACAGCACCTTTAGAatcctgtcgttt                        >  1:4410524‑M1/1‑23 (MQ=255)
           aaTCGGTAAACAGCACCTTTAGAatcctgtcgttt                        >  1:1812374‑M1/1‑23 (MQ=255)
            aTCGGTAAACAGCACCTTTAGAatcctgtcgtttg                       >  1:1581612‑M1/1‑22 (MQ=255)
             tCGGTAAACAGCACCTTTAGAatcctgtcgtttgt                      >  1:2015690‑M1/1‑21 (MQ=255)
              cGGTAAACAGCACCTTTAGAatcctgtcgtttgtt                     <  1:4876518‑M1/35‑16 (MQ=255)
              cGGTAAACAGCACCTTTAGAatcctgtcgtttgtt                     <  1:2106747‑M1/35‑16 (MQ=255)
              cGGTAAACAGCACCTTTAGAatcctgtcgtttgtt                     <  1:4772847‑M1/35‑16 (MQ=255)
               ggTAAACAGCACCTTTAGAatcctgtcgtttgttt                    <  1:3338206‑M1/35‑17 (MQ=255)
               ggTAAACAGCACCTTTAGAatcctgtcgtttgttt                    >  1:2287230‑M1/1‑19 (MQ=255)
               ggTAAACAGCACCTTTAGAatcctgtcgtttgttt                    >  1:3502025‑M1/1‑19 (MQ=255)
               ggTAAACAGCACCTTTAGAatcctgtcgtttgttt                    >  1:7340145‑M1/1‑19 (MQ=255)
               ggTAAACAGCACCTTTAGAatcctgtcgtttgttt                    <  1:3204999‑M1/35‑17 (MQ=255)
               ggTAAACAGCACCTTTAGAatcctgtcgtttgttt                    >  1:2022197‑M1/1‑19 (MQ=255)
               ggTAAACAGCACCTTTAGAatcctgtcgtttgttt                    <  1:556939‑M1/35‑17 (MQ=255)
                gTAAACAGCACCTTTAGAatcgtgtcgtttgtttt                   <  1:1267772‑M1/35‑18 (MQ=255)
                gTAAACAGCACCTTTAGAatcctgtcgtttgtttt                   <  1:1482044‑M1/35‑18 (MQ=255)
                gTAAACAGCACCTTTAGAatcctgtcgtttgtttt                   <  1:2660700‑M1/35‑18 (MQ=255)
                gTAAACAGCACCTTTAGAatcctgtcgtttgtttt                   <  1:7788027‑M1/35‑18 (MQ=255)
                gTAAACAGCACCTTTAGAatcctgtcgtttgtttt                   <  1:1291295‑M1/35‑18 (MQ=255)
                gTAAACAGCACCTTTAGAatcctgtcgtttgtttt                   <  1:1882728‑M1/35‑18 (MQ=255)
                gTAAACAGCACCTTTAGAatcctgtcgtttgtttt                   >  1:6062130‑M1/1‑18 (MQ=255)
                gTAAACAGCACCTTTAGAatcctgtcgtttgtttt                   <  1:3387649‑M1/35‑18 (MQ=255)
                 tAAACAGCACCTTTAGAatcctgtcgtttgttttc                  >  1:1586312‑M1/1‑17 (MQ=255)
                 tAAACAGCACCTTTAGAatcctgtcgtttgttttc                  <  1:3255195‑M1/35‑19 (MQ=255)
                 tAAACAGCACCTTTAGAatcctgtcgtttgttttc                  <  1:6314269‑M1/35‑19 (MQ=255)
                  aaaCAGCACCTTTAGAatcctgtcgtttgttttcg                 >  1:560726‑M1/1‑16 (MQ=255)
                  aaaCAGCACCTTTAGAatcctgtcgtttgttttcg                 >  1:7302524‑M1/1‑16 (MQ=255)
                   aaCAGCACCTTTAGAatcctgtcgtttgttttcga                <  1:6521503‑M1/35‑21 (MQ=255)
                   aaCAGCACCTTTAGAatcctgtcgtttgttttcga                <  1:7830592‑M1/35‑21 (MQ=255)
                   aaCAGCACCTTTAGAatcctgtcgtttgttttcga                >  1:4842328‑M1/1‑15 (MQ=255)
                   aaCAGCACCTTTAGAatcctgtcgtttgttttcga                <  1:376363‑M1/35‑21 (MQ=255)
                    aCAGCACCTTTAGAatcctgtcgtttgttttcgat               <  1:662300‑M1/35‑22 (MQ=255)
                    aCAGCACCTTTAGAatcctgtcgtttgttttcgat               <  1:6394520‑M1/35‑22 (MQ=255)
                     cAGCACCTTTAGAatcctgtcgtttgttttcgatt              >  1:4255227‑M1/1‑13 (MQ=255)
                      aGCACCTTTAGAatcctgtcgtttgttttcgattt             <  1:111051‑M1/35‑24 (MQ=255)
                      aGCACCTTTAGAatcctgtcgtttgttttcgattt             <  1:5129118‑M1/35‑24 (MQ=255)
                      aGCACCTTTAGAatcctgtcgtttgttttcgattt             <  1:6252430‑M1/35‑24 (MQ=255)
                      aGCACCTTTAGAatcctgtcgtttgttttcgattt             <  1:5829989‑M1/35‑24 (MQ=255)
                       gCACCTTTAGAatcctgtcgtttgttttcgatttc            >  1:5167073‑M1/1‑11 (MQ=255)
                       gCACCTTTAGAatcctgtcgtttgttttcgatttc            <  1:2233421‑M1/35‑25 (MQ=255)
                        cACCTTTAGAatcctgtcgtttgttttcgatttca           <  1:2583218‑M1/35‑26 (MQ=255)
                         aCCTTTAGAatcctgtcgtttgttttcgatttcaa          <  1:5078764‑M1/35‑27 (MQ=255)
                         aCCTTTAGAatcctgtcgtttgttttcgatttcaa          <  1:6107096‑M1/35‑27 (MQ=255)
                          ccTTTAGAatcctgtcgtttgttttcgatttcaaa         <  1:6096957‑M1/35‑28 (MQ=255)
                           cTTTAGAatcctgtcgtttgttttcgatttcaaaa        <  1:607175‑M1/35‑29 (MQ=255)
                           cTTTAGAatcctgtcgtttgttttcgatttcaaaa        <  1:3372389‑M1/35‑29 (MQ=255)
                           cTTTAGAatcctgtcgtttgttttcgatttcaaaa        <  1:6375960‑M1/35‑29 (MQ=255)
                           cTTTAGAatcctgtcgtttgttttcgatttcaaaa        >  1:6389363‑M1/1‑7 (MQ=255)
                           cTTTAGAatcctgtcgtttgttttcgatttcaaaa        <  1:3372354‑M1/35‑29 (MQ=255)
                           cTTTAGAatcctgtcgtttgttttcgatttcaaaa        >  1:272145‑M1/1‑7 (MQ=255)
                           cTTTAGAatcctgtcgtttgttttcgatttcaaaa        <  1:506823‑M1/35‑29 (MQ=255)
                            tttAGAatcctgtcgtttgttttcgatttcaaaat       <  1:4969153‑M1/35‑30 (MQ=255)
                             ttAGAatcctgtcgtttgttttcgatttcaaaata      >  1:7343378‑M1/1‑5 (MQ=255)
                             ttAGAatcctgtcgtttgttttcgatttcaaaata      <  1:7150113‑M1/35‑31 (MQ=255)
                             ttAGAatcctgtcgtttgttttcgatttcaaaata      >  1:1250060‑M1/1‑5 (MQ=255)
                             ttAGAatcctgtcgtttgttttcgatttcaaaata      <  1:3023200‑M1/35‑31 (MQ=255)
                             ttAGAatcctgtcgtttgttttcgatttcaaaata      <  1:4619139‑M1/35‑31 (MQ=255)
                             ttAGAatcctgtcgtttgttttcgatttcaaaata      <  1:5175621‑M1/35‑31 (MQ=255)
                              tAGAatcctgtcgtttgttttcgatttcaacatat     >  1:672852‑M1/1‑4 (MQ=255)
                              tAGAatcctgtcgtttgttttcgatttcaaaatat     <  1:1444464‑M1/35‑32 (MQ=255)
                              tAGAatcctgtcgtttgttttcgatttcaaaatat     >  1:7363405‑M1/1‑4 (MQ=255)
                              tAGAatcctgtcgtttgttttcgatttcaaaatat     >  1:7691913‑M1/1‑4 (MQ=255)
                              tAGAatcctgtcgtttgttttcgatttcaaaatat     <  1:4339694‑M1/35‑32 (MQ=255)
                              tAGAatcctgtcgtttgttttcgatttcaaaatat     <  1:2110365‑M1/35‑32 (MQ=255)
                              tAGAatcctgtcgtttgttttcgatttcaaaatat     >  1:7016523‑M1/1‑4 (MQ=255)
                              tAGAatcctgtcgtttgttttcgatttcaaaatat     <  1:6212273‑M1/35‑32 (MQ=255)
                               aGAatcctgtcgtttgttttcgatttcaaaatata    <  1:561979‑M1/35‑33 (MQ=255)
                                gAatcctgtcgtttgttttcgatttcaaaatataa   >  1:2195202‑M1/1‑2 (MQ=255)
                                gAatcctgtcgtttgttttcgatttcaaaatataa   >  1:1002472‑M1/1‑2 (MQ=255)
                                 aatcctgtcgtttgttttcgttttcaaaatataat  >  1:7115549‑M1/1‑1 (MQ=255)
                                 aatcctgtcgtttgttttcgatttcaaaatataat  >  1:6549200‑M1/1‑1 (MQ=255)
                                 |                                  
GCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGT  >  NC_000913/2165117‑2165184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑