Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 110 [0] | [0] 108 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 2320143 | 0 (0.000) | 99 (1.410) | 45/66 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA |
Only 100 of 108 total aligned reads displayed.
CAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCC > NC_000913/2336599‑2336667 | tggtcattgtcccaacgcttactattggttatatt < 1:1561996‑M2/1‑1 (MQ=255) ggtcattgtcccaacgcttactattggttatattt < 1:4529193‑M2/2‑1 (MQ=255) ggtcattgtcccaacgcttactattggttatattt < 1:4934676‑M2/2‑1 (MQ=255) ggtcattgtcccaacgcttactattggttatattt > 1:3646565‑M2/34‑35 (MQ=255) ggtcattgtcccaacgcttactattggttatattt < 1:7335419‑M2/2‑1 (MQ=255) ggtcattgtcccaacgcttactattggttatattt < 1:2590924‑M2/2‑1 (MQ=255) ggtcattgtcccaacgcttactattggttatattt < 1:2335263‑M2/2‑1 (MQ=255) gtcattgtcccaacgcttactattggttatatTTc > 1:5429243‑M2/33‑35 (MQ=255) gtcattgtcccaacgcttactattggttatatTTc > 1:7152778‑M2/33‑35 (MQ=255) gtcattgtcccaacgcttactattggttatatTTc > 1:1359578‑M2/33‑35 (MQ=255) gtcattgtcccaacgcttactattggttatatTTc > 1:7465849‑M2/33‑35 (MQ=255) gtcattgtcccaacgcttactattggttatatTTc > 1:1740651‑M2/33‑35 (MQ=255) tcattgtcccaacgcttactattggttatatTTca < 1:1036568‑M2/4‑1 (MQ=255) tcattgtcccaacgcttactattggttatatTTca < 1:6395814‑M2/4‑1 (MQ=255) tcattgtcccaacgcttactattggttatatTTca < 1:1184627‑M2/4‑1 (MQ=255) cattgtcccaacgcttactattggttatatTTcac < 1:5679591‑M2/5‑1 (MQ=255) cattgtcccaacgcttactattggttatatTTcac > 1:4679066‑M2/31‑35 (MQ=255) cattgtcccaacgcttactattggttatatTTcac < 1:3639048‑M2/5‑1 (MQ=255) attgtcccaacgcttactattggttatatTTcacc > 1:1470318‑M2/30‑35 (MQ=255) attgtcccaacgcttactattggttatatTTcacc > 1:71069‑M2/30‑35 (MQ=255) ttgtcccaacgcttactattggttatatTTcacca < 1:6081885‑M2/7‑1 (MQ=255) ttgtcccaacgcttactattggttatatTTcacca > 1:1146528‑M2/29‑35 (MQ=255) ttgtcccaacgcttactattggttatatTTcacca < 1:7452560‑M2/7‑1 (MQ=255) ttgtcccaacgcttactattggttatatTTcacca > 1:4967277‑M2/29‑35 (MQ=255) ttgtcccaacgcttactattggttatatTTcacca > 1:6890957‑M2/29‑35 (MQ=255) ttgtcccaacgcttactattggttatatTTcacca < 1:5973566‑M2/7‑1 (MQ=255) ttgtcccaacgcttactattggttatatTTcacca > 1:1345220‑M2/29‑35 (MQ=255) tgtcccaacgcttactattggttatatTTcaccac < 1:4097980‑M2/8‑1 (MQ=255) gtcccaacgcttactattggttatatTTCACCACt > 1:2948213‑M2/27‑35 (MQ=255) gtcccaacgcttactattggttatatTTCACCACt < 1:3458684‑M2/9‑1 (MQ=255) cccaacgcttactattggttatatTTCACCACTCa < 1:4472224‑M2/11‑1 (MQ=255) cccaacgcttactattggttatatTTCACCACTCa < 1:6786187‑M2/11‑1 (MQ=255) cccaacgcttactattggttatatTTCACCACTCa < 1:619794‑M2/11‑1 (MQ=255) ccaacgcttactattggttatatTTCACCACTCAt > 1:7788012‑M2/24‑35 (MQ=255) ccaacgcttactattggttatatTTCACCACTCAt < 1:5769496‑M2/12‑1 (MQ=255) caacgcttactattggttatatTTCACCACTCAtt < 1:1867804‑M2/13‑1 (MQ=255) caacgcttactattggttatatTTCACCACTCAtt < 1:101501‑M2/13‑1 (MQ=255) aacgcttactattggttatatTTCACCACTCATTg < 1:3812792‑M2/14‑1 (MQ=255) aacgcttactattggttatatTTCACCACTCATTg < 1:7565841‑M2/14‑1 (MQ=255) acgcttactattggttatatTTCACCACTCATTGc > 1:363091‑M2/21‑35 (MQ=255) acgcttactattggttatatTTCACCACTCATTGc < 1:2632893‑M2/15‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGcc < 1:5516307‑M2/16‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGcc > 1:2070011‑M2/20‑35 (MQ=255) gcttactattggttatatTTCACCACTCATTGCca < 1:3622913‑M2/17‑1 (MQ=255) gcttactattggttatatTTCACCACTCATTGCca < 1:7184014‑M2/17‑1 (MQ=255) gcttactattggttatatTTCACCACTCATTGCca > 1:2745661‑M2/19‑35 (MQ=255) gcttactattggttatatTTCACCACTCATTGCca < 1:7686707‑M2/17‑1 (MQ=255) ttactattggttatatTTCACCACTCATTGCcaca < 1:4393795‑M2/19‑1 (MQ=255) tactattggttatatTTCACCACTCATTGCCACAt < 1:7776399‑M2/20‑1 (MQ=255) tactattggttatatTTCACCACTCATTGCCACAt < 1:2104980‑M2/20‑1 (MQ=255) actattggttatatTTCACCACTCATTGCCACAtt > 1:5950422‑M2/15‑35 (MQ=255) actattggttatatTTCACCACTCATTGCCACAtt < 1:6854332‑M2/21‑1 (MQ=255) actattggttatatTTCACCACTCATTGCCACAtt > 1:304211‑M2/15‑35 (MQ=255) actattggttatatTTCACCACTCATTGCCACAtt < 1:413425‑M2/21‑1 (MQ=255) actattggttatatTTCACCACTCATTGCCACAtt < 1:7734554‑M2/21‑1 (MQ=255) ctattggttatatTTCACCACTCATTGCCACATTc > 1:871592‑M2/14‑35 (MQ=255) ctattggttatatTTCACCACTCATTGCCACATTc > 1:2488392‑M2/14‑35 (MQ=255) tattggttatatTTCACCACTCATTGCCACATTcc < 1:332347‑M2/23‑1 (MQ=255) tattggttatatTTCACCACTCATTGCCACATTcc < 1:1165460‑M2/23‑1 (MQ=255) tattggttatatTTCACCACTCATTGCCACATTcc < 1:2075072‑M2/23‑1 (MQ=255) tattggttatatTTCACCACTCATTGCCACATTcc > 1:2936220‑M2/13‑35 (MQ=255) tattggttatatTTCACCACTCATTGCCACATTcc > 1:6846309‑M2/13‑35 (MQ=255) tattggttatatTTCACCACTCATTGCCACATTcc > 1:5964416‑M2/13‑35 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCtt > 1:5271237‑M2/11‑35 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCtt < 1:5022694‑M2/25‑1 (MQ=255) tggttatatTTCACCACTCATTGCCACATTCCTtg < 1:166318‑M2/26‑1 (MQ=255) tggttatatTTCACCACTCATTGCCACATTCCTtg < 1:5234959‑M2/26‑1 (MQ=255) ggttatatTTCACCACTCATTGCCACATTCCTtgt > 1:3018111‑M2/9‑35 (MQ=255) gttatatTTCCCCACTCATTGCCACATTCCTtgtg < 1:2384711‑M2/28‑1 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTtgtg < 1:1305431‑M2/28‑1 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTtgtg < 1:6236031‑M2/28‑1 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTgtgt > 1:3110640‑M2/7‑35 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTgtgt > 1:432252‑M2/7‑35 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:5105383‑M2/30‑1 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:5105299‑M2/30‑1 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:3375285‑M2/30‑1 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:3385389‑M2/30‑1 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:2610081‑M2/30‑1 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:3815903‑M2/30‑1 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:43901‑M2/30‑1 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGtat > 1:6617672‑M2/5‑35 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGtat < 1:693021‑M2/31‑1 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGtat > 1:311378‑M2/5‑35 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGtat > 1:4786265‑M2/5‑35 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGtat > 1:3663710‑M2/5‑35 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGtat < 1:3712397‑M2/31‑1 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGtat < 1:5540708‑M2/31‑1 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGtat < 1:525505‑M2/31‑1 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGtata > 1:1613300‑M2/4‑35 (MQ=255) atTTCACCACTCATTGCCACATTCCTTGTGTATAg > 1:4153552‑M2/3‑35 (MQ=255) atTTCACCACTCATTACCACATTCCTTGTGTATAg > 1:6939264‑M2/3‑35 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGc < 1:3093360‑M2/34‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGc < 1:4428039‑M2/34‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGc > 1:5679540‑M2/2‑35 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGc < 1:4043332‑M2/34‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGc < 1:1543096‑M2/34‑1 (MQ=255) ttCACCACTCATTGCCACATTCCTTGTGTATagcc < 1:3305/35‑1 (MQ=255) ttCACCACTCATTGCCACATTCCTTGTGTATagcc > 1:6554019/1‑35 (MQ=255) ttCACCACTCATTGCCACATTCCTTGTGTATagcc > 1:6527486/1‑35 (MQ=255) ttCACCACTCATTGCCACATTCCTTGTGTATagcc < 1:3349/35‑1 (MQ=255) | CAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCC > NC_000913/2336599‑2336667 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |