| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 81 [0] | [0] 82 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 80 (0.960) | 49/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 1:3666873/50‑1TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 1:3398516/50‑1 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:4755108/1‑49 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:5194234/1‑50 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA < 1:5086339/50‑1 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:1729883/1‑49 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:1309223/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:3778082/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:359431/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:4765865/49‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:1971075/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:1406448/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:6177797/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:5843165/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:4184335/50‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC < 1:5066400/50‑1 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:2042957/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:1360930/1‑50 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGG < 1:5754254/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:5037291/1‑49 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:2777894/1‑49 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:6231159/1‑50 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA < 1:3906015/50‑1 TACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:1946091/1‑49 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:303313/1‑48 TTCACTGTATTTATAACAACATCTATGAATACTAACAATGCCGGACAG > 1:2703758/1‑48 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:1753699/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:5494906/1‑50 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:1376735/1‑50 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:59092/1‑50 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA < 1:6339148/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA < 1:931580/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:270332/49‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:1628381/50‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:1835166/50‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:283429/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:1345532/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:2423211/1‑50 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:2963155/1‑49 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:2106779/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:4848057/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:3330961/49‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:1813931/49‑1 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:6122428/1‑50 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:5231456/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:2006151/1‑49 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 1:2850121/50‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:4543057/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:3082179/49‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:1297344/49‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:2311911/49‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:1058052/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:5859802/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:619/49‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 1:5568608/1‑50 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT > 1:4913145/1‑50 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT > 1:424109/1‑50 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT > 1:1468217/1‑50 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT > 1:6270799/1‑50 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:4324871/1‑49 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:4840080/1‑49 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:4274722/1‑49 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:5229640/1‑50 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:1859734/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:3372187/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 1:5839624/49‑1 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA < 1:591855/50‑1 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA > 1:371138/1‑50 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA > 1:4498193/1‑50 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA < 1:1738266/50‑1 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:1329887/1‑49 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:1153129/1‑49 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:2402269/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:5391116/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:4358068/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:4222964/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:6175040/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:2723416/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG < 1:317631/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG < 1:6384369/50‑1 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |