| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 81 [0] | [0] 82 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 80 (0.960) | 49/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
AAAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367594‑3367692 | tgctcagacacattacattcactgtatttataacaacatcaatgaatact < 1:3398516‑M2/1‑1 (MQ=255)tgctcagacacattacattcactgtatttataacaacatcaatgaatact < 1:3666873‑M2/1‑1 (MQ=255) gctcagacacattacattcactgtatttataacaacatcaatgaatact > 1:4755108‑M2/49‑49 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa > 1:5194234‑M2/48‑50 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa < 1:5086339‑M2/3‑1 (MQ=255) cagacacattacattcactgtatttataacaacatcaatgaatacTAAc > 1:1729883‑M2/46‑49 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa > 1:1309223‑M2/45‑50 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa > 1:359431‑M2/45‑50 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa > 1:3778082‑M2/45‑50 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACa < 1:4765865‑M2/5‑1 (MQ=255) gacacattacattcactgtatttataacaacatcaatgaatacTAACAAt < 1:1971075‑M2/7‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:1406448‑M2/8‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:6177797‑M2/8‑1 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATGc < 1:4184335‑M2/9‑1 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATGc < 1:5843165‑M2/9‑1 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc < 1:5066400‑M2/10‑1 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:1360930‑M2/40‑50 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:2042957‑M2/40‑50 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCgg < 1:5754254‑M2/12‑1 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:5037291‑M2/39‑49 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:2777894‑M2/39‑49 (MQ=255) ttacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa < 1:3906015‑M2/13‑1 (MQ=255) ttacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:6231159‑M2/38‑50 (MQ=255) tacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:1946091‑M2/37‑49 (MQ=255) acattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:303313‑M2/36‑48 (MQ=255) ttcactgtatttataacaacatctatgaatacTAACAATGCCGGACAg > 1:2703758‑M2/33‑48 (MQ=255) cactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg < 1:1753699‑M2/19‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:270332‑M2/20‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa > 1:1376735‑M2/30‑50 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa > 1:59092‑M2/30‑50 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa < 1:6339148‑M2/21‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa < 1:931580‑M2/21‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa > 1:5494906‑M2/30‑50 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:283429‑M2/29‑50 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc < 1:1628381‑M2/22‑1 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc < 1:1835166‑M2/22‑1 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:1345532‑M2/26‑50 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:2423211‑M2/26‑50 (MQ=255) atttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:2963155‑M2/25‑49 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATc < 1:3330961‑M2/26‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATc < 1:1813931‑M2/26‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCa < 1:4848057‑M2/27‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCa < 1:2106779‑M2/27‑1 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg > 1:6122428‑M2/22‑50 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg < 1:5231456‑M2/29‑1 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg > 1:2006151‑M2/21‑49 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGc < 1:3082179‑M2/30‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGc < 1:1297344‑M2/30‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGc < 1:2311911‑M2/30‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCa < 1:2850121‑M2/31‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCa > 1:4543057‑M2/20‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt < 1:1058052‑M2/33‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt < 1:5859802‑M2/33‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAt < 1:619‑M2/32‑1 (MQ=255) aacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCg > 1:5568608‑M2/16‑50 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt > 1:424109‑M2/14‑50 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt > 1:4913145‑M2/14‑50 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt > 1:1468217‑M2/14‑50 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt > 1:6270799‑M2/14‑50 (MQ=255) tcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:4840080‑M2/12‑49 (MQ=255) tcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:4324871‑M2/12‑49 (MQ=255) tcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:4274722‑M2/12‑49 (MQ=255) caatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:5229640‑M2/11‑50 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtat < 1:3372187‑M2/41‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtat < 1:1859734‑M2/41‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta < 1:5839624‑M2/40‑1 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata < 1:591855‑M2/42‑1 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata > 1:371138‑M2/9‑50 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata > 1:4498193‑M2/9‑50 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata < 1:1738266‑M2/42‑1 (MQ=255) gaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:1329887‑M2/7‑49 (MQ=255) gaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:1153129‑M2/7‑49 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt < 1:2402269‑M2/46‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:5391116‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:4358068‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:4222964‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:6175040‑M2/47‑1 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:2723416‑M2/47‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg < 1:317631‑M2/49‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg < 1:6384369‑M2/49‑1 (MQ=255) tAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGt > 1:5600310/1‑50 (MQ=255) tAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGt > 1:3422797/1‑50 (MQ=255) | AAAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367594‑3367692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |