| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 81 [0] | [0] 82 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 80 (0.960) | 49/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGAA > NC_000913/3362112‑3362210 | aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc < 1:5777492/50‑1 (MQ=255) tGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt < 1:3666873‑M1/50‑2 (MQ=255) tGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt < 1:3398516‑M1/50‑2 (MQ=255) gCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt > 1:4755108‑M1/1‑48 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa > 1:5194234‑M1/1‑47 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 1:5086339‑M1/50‑4 (MQ=255) cAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaac > 1:1729883‑M1/1‑45 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:1309223‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:3778082‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:359431‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaaca < 1:4765865‑M1/49‑6 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:1971075‑M1/50‑8 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg < 1:1406448‑M1/50‑9 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg < 1:6177797‑M1/50‑9 (MQ=255) cacaTTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatgc < 1:5843165‑M1/50‑10 (MQ=255) cacaTTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatgc < 1:4184335‑M1/50‑10 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc < 1:5066400‑M1/50‑11 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:2042957‑M1/1‑39 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:1360930‑M1/1‑39 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgg < 1:5754254‑M1/50‑13 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:5037291‑M1/1‑38 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:2777894‑M1/1‑38 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga < 1:3906015‑M1/50‑14 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:6231159‑M1/1‑37 (MQ=255) tacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:1946091‑M1/1‑36 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:303313‑M1/1‑35 (MQ=255) ttCACTGTATTTATAACAACATCTATGAATACtaacaatgccggacag > 1:2703758‑M1/1‑32 (MQ=255) cACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag < 1:1753699‑M1/49‑20 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta > 1:1376735‑M1/1‑29 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta < 1:6339148‑M1/50‑22 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta > 1:59092‑M1/1‑29 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta > 1:5494906‑M1/1‑29 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta < 1:931580‑M1/50‑22 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 1:270332‑M1/49‑21 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac < 1:1835166‑M1/50‑23 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac < 1:1628381‑M1/50‑23 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:283429‑M1/1‑28 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:1345532‑M1/1‑25 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:2423211‑M1/1‑25 (MQ=255) aTTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:2963155‑M1/1‑24 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatca < 1:4848057‑M1/50‑28 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatca < 1:2106779‑M1/50‑28 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatc < 1:1813931‑M1/49‑27 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatc < 1:3330961‑M1/49‑27 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg > 1:6122428‑M1/1‑21 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg < 1:5231456‑M1/49‑30 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg > 1:2006151‑M1/1‑20 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca > 1:4543057‑M1/1‑19 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca < 1:2850121‑M1/50‑32 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggc < 1:2311911‑M1/49‑31 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggc < 1:3082179‑M1/49‑31 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggc < 1:1297344‑M1/49‑31 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt < 1:1058052‑M1/50‑34 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt < 1:5859802‑M1/50‑34 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcat < 1:619‑M1/49‑33 (MQ=255) aacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcg > 1:5568608‑M1/1‑15 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt > 1:1468217‑M1/1‑13 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt > 1:6270799‑M1/1‑13 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt > 1:4913145‑M1/1‑13 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt > 1:424109‑M1/1‑13 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:4324871‑M1/1‑11 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:4840080‑M1/1‑11 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:4274722‑M1/1‑11 (MQ=255) cAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:5229640‑M1/1‑10 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgttttat < 1:1859734‑M1/50‑42 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgttttat < 1:3372187‑M1/50‑42 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta < 1:5839624‑M1/49‑41 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 1:591855‑M1/50‑43 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata > 1:371138‑M1/1‑8 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata > 1:4498193‑M1/1‑8 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 1:1738266‑M1/50‑43 (MQ=255) gAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:1329887‑M1/1‑6 (MQ=255) gAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:1153129‑M1/1‑6 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat < 1:2402269‑M1/50‑47 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:5391116‑M1/50‑48 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:4358068‑M1/50‑48 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:4222964‑M1/50‑48 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:6175040‑M1/50‑48 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:2723416‑M1/50‑48 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcgg < 1:317631‑M1/50‑50 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcgg < 1:6384369‑M1/50‑50 (MQ=255) | ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGAA > NC_000913/3362112‑3362210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |