| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 71 [0] | [0] 72 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 70 (0.960) | 49/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTC > NC_000913/1140988‑1141036 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT > 1:1305783/1‑50 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTT < 1:1193222/50‑1 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTT < 1:2306657/50‑1 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTT < 1:1855597/50‑1 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC < 1:2377324/50‑1 AATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGC > 1:157709/1‑50 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT > 1:4740581/1‑50 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT > 1:2403313/1‑50 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT > 1:1840136/1‑50 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:23193/1‑50 TTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:1325768/1‑49 TGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT < 1:4438960/49‑1 GCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTA > 1:4667797/1‑49 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA > 1:751029/1‑49 CGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA > 1:4455293/1‑49 GCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:3630717/1‑50 GCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:2082794/1‑50 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACAT < 1:1660442/50‑1 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:4050498/1‑49 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA < 1:5375169/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:4845596/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:1492341/1‑50 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATC < 1:2823423/50‑1 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 1:2822937/1‑50 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:4648406/50‑1 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:5256629/50‑1 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 1:1214495/1‑50 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:2071632/50‑1 CGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT < 1:5463463/50‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG < 1:4836877/50‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG < 1:2404387/50‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 1:1161357/1‑49 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:1371594/50‑1 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG > 1:2512914/1‑49 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAA < 1:5279038/50‑1 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAAC > 1:3560431/1‑50 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA < 1:1292676/49‑1 AACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACT > 1:5262415/1‑50 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTG < 1:2621687/50‑1 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG > 1:3288157/1‑50 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG > 1:1239893/1‑50 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:2502372/1‑50 ATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGT < 1:5361766/50‑1 ATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGT < 1:5556669/50‑1 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG < 1:1389673/50‑1 ATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGT > 1:3768679/1‑50 ATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGT < 1:3762104/50‑1 ATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGT > 1:1059907/1‑50 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT > 1:4754092/1‑50 CCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTT < 1:1493584/49‑1 CGGCCTGCAGTGTTCGCTTTAAAACATATCGTGAAACTGGGTATGTTTT < 1:96854/49‑1 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTG < 1:2427273/50‑1 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTT < 1:337534/49‑1 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT > 1:5073677/1‑50 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT > 1:3706170/1‑50 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT > 1:1409333/1‑50 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGCATGTTTTGTCT < 1:2641248/50‑1 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG > 1:4734261/1‑50 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG > 1:914649/1‑50 TGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGC > 1:884269/1‑50 TGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGC > 1:1500653/1‑50 GCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC > 1:2730533/1‑50 GCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC > 1:2086463/1‑50 GCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC > 1:1827072/1‑50 GCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC > 1:4984082/1‑50 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCT > 1:2756911/1‑50 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCT < 1:68291/50‑1 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG < 1:110485/50‑1 GTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTC > 1:4881033/1‑50 GTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTC > 1:4464738/1‑50 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTC > NC_000913/1140988‑1141036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |