| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 71 [0] | [0] 72 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 70 (0.960) | 49/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
TAAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGG > NC_000913/1129347‑1129445 | tAAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCtgcagtg > 1:741965/1‑50 (MQ=255) aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt > 1:1305783‑M1/1‑49 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt < 1:1193222‑M1/50‑3 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt < 1:2306657‑M1/50‑3 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt < 1:1855597‑M1/50‑3 (MQ=255) aGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttc < 1:2377324‑M1/50‑4 (MQ=255) aaTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc > 1:157709‑M1/1‑45 (MQ=255) aTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgct > 1:2403313‑M1/1‑44 (MQ=255) aTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgct > 1:4740581‑M1/1‑44 (MQ=255) aTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgct > 1:1840136‑M1/1‑44 (MQ=255) tttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:23193‑M1/1‑43 (MQ=255) ttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:1325768‑M1/1‑42 (MQ=255) tGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttt < 1:4438960‑M1/49‑9 (MQ=255) gCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttta > 1:4667797‑M1/1‑40 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa > 1:751029‑M1/1‑39 (MQ=255) cgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa > 1:4455293‑M1/1‑37 (MQ=255) gccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:2082794‑M1/1‑36 (MQ=255) gccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:3630717‑M1/1‑36 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacat < 1:1660442‑M1/50‑16 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:4050498‑M1/1‑35 (MQ=255) cgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacata < 1:5375169‑M1/50‑17 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:1492341‑M1/1‑33 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:4845596‑M1/50‑18 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatc < 1:2823423‑M1/50‑19 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:4648406‑M1/50‑21 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:2071632‑M1/50‑21 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:5463463‑M1/50‑21 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:1214495‑M1/1‑30 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:5256629‑M1/50‑21 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:2822937‑M1/1‑30 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatg < 1:4836877‑M1/50‑22 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatg < 1:2404387‑M1/50‑22 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:1161357‑M1/1‑29 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga < 1:1371594‑M1/50‑23 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatg > 1:2512914‑M1/1‑28 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaa < 1:5279038‑M1/50‑24 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaac > 1:3560431‑M1/1‑25 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa < 1:1292676‑M1/49‑25 (MQ=255) aaCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact > 1:5262415‑M1/1‑24 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactg < 1:2621687‑M1/50‑28 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg > 1:3288157‑M1/1‑22 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg > 1:1239893‑M1/1‑22 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:2502372‑M1/1‑21 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggt < 1:5361766‑M1/50‑31 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggt < 1:5556669‑M1/50‑31 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg < 1:1389673‑M1/50‑34 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt < 1:3762104‑M1/50‑35 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt > 1:3768679‑M1/1‑16 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt > 1:1059907‑M1/1‑16 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtt > 1:4754092‑M1/1‑15 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttt < 1:1493584‑M1/49‑37 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcgtgaaactgggtatgtttt < 1:96854‑M1/49‑38 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttg < 1:2427273‑M1/50‑39 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:337534‑M1/49‑38 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 1:5073677‑M1/1‑11 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct > 1:3706170‑M1/1‑9 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct > 1:1409333‑M1/1‑9 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggcatgttttgtct < 1:2641248‑M1/50‑42 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg > 1:4734261‑M1/1‑8 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg > 1:914649‑M1/1‑8 (MQ=255) tGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc > 1:884269‑M1/1‑7 (MQ=255) tGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc > 1:1500653‑M1/1‑7 (MQ=255) gCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc > 1:2730533‑M1/1‑6 (MQ=255) gCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc > 1:2086463‑M1/1‑6 (MQ=255) gCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc > 1:1827072‑M1/1‑6 (MQ=255) gCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc > 1:4984082‑M1/1‑6 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct < 1:68291‑M1/50‑46 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct > 1:2756911‑M1/1‑5 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg < 1:110485‑M1/50‑47 (MQ=255) gttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgctc > 1:4881033‑M1/1‑1 (MQ=255) gttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgctc > 1:4464738‑M1/1‑1 (MQ=255) | TAAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGG > NC_000913/1129347‑1129445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |