| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 71 [0] | [0] 72 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 70 (0.960) | 49/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
GCATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCT > NC_000913/1140939‑1141037 | aaagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt > 1:1305783‑M2/50‑50 (MQ=255) aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgtt < 1:1193222‑M2/2‑1 (MQ=255) aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgtt < 1:2306657‑M2/2‑1 (MQ=255) aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgtt < 1:1855597‑M2/2‑1 (MQ=255) agaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTc < 1:2377324‑M2/3‑1 (MQ=255) aatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGc > 1:157709‑M2/46‑50 (MQ=255) atttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCt > 1:4740581‑M2/45‑50 (MQ=255) atttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCt > 1:2403313‑M2/45‑50 (MQ=255) atttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCt > 1:1840136‑M2/45‑50 (MQ=255) tttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt > 1:23193‑M2/44‑50 (MQ=255) ttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt > 1:1325768‑M2/43‑49 (MQ=255) tgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCttt < 1:4438960‑M2/8‑1 (MQ=255) gcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTa > 1:4667797‑M2/41‑49 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa > 1:751029‑M2/40‑49 (MQ=255) cgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaaa > 1:4455293‑M2/38‑49 (MQ=255) gccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa > 1:3630717‑M2/37‑50 (MQ=255) gccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa > 1:2082794‑M2/37‑50 (MQ=255) ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACat < 1:1660442‑M2/15‑1 (MQ=255) ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa > 1:4050498‑M2/36‑49 (MQ=255) cggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACata < 1:5375169‑M2/16‑1 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:1492341‑M2/34‑50 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat < 1:4845596‑M2/17‑1 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATc < 1:2823423‑M2/18‑1 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:4648406‑M2/20‑1 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:2822937‑M2/31‑50 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:5256629‑M2/20‑1 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:5463463‑M2/20‑1 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:1214495‑M2/31‑50 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:2071632‑M2/20‑1 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:1161357‑M2/30‑49 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATg < 1:2404387‑M2/21‑1 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATg < 1:4836877‑M2/21‑1 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATg > 1:2512914‑M2/29‑49 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGa < 1:1371594‑M2/22‑1 (MQ=255) tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaa < 1:5279038‑M2/23‑1 (MQ=255) taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaaa < 1:1292676‑M2/24‑1 (MQ=255) taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAAc > 1:3560431‑M2/26‑50 (MQ=255) aacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt > 1:5262415‑M2/25‑50 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTg < 1:2621687‑M2/27‑1 (MQ=255) caatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTgg > 1:1239893‑M2/23‑50 (MQ=255) caatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTgg > 1:3288157‑M2/23‑50 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg > 1:2502372‑M2/22‑50 (MQ=255) atgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGt < 1:5556669‑M2/30‑1 (MQ=255) atgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGt < 1:5361766‑M2/30‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg < 1:1389673‑M2/33‑1 (MQ=255) attccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGt < 1:3762104‑M2/34‑1 (MQ=255) attccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGt > 1:3768679‑M2/17‑50 (MQ=255) attccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGt > 1:1059907‑M2/17‑50 (MQ=255) ttccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtt > 1:4754092‑M2/16‑50 (MQ=255) ccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGttt < 1:1493584‑M2/36‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCGTGAAACTGGGTATGtttt < 1:96854‑M2/37‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt < 1:337534‑M2/37‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg < 1:2427273‑M2/38‑1 (MQ=255) ggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGt > 1:5073677‑M2/12‑50 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct > 1:1409333‑M2/10‑50 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct > 1:3706170‑M2/10‑50 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGCATGTTTTGTct < 1:2641248‑M2/41‑1 (MQ=255) ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg > 1:4734261‑M2/9‑50 (MQ=255) ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg > 1:914649‑M2/9‑50 (MQ=255) tgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgc > 1:1500653‑M2/8‑50 (MQ=255) tgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgc > 1:884269‑M2/8‑50 (MQ=255) gcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcc > 1:4984082‑M2/7‑50 (MQ=255) gcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcc > 1:2730533‑M2/7‑50 (MQ=255) gcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcc > 1:2086463‑M2/7‑50 (MQ=255) gcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcc > 1:1827072‑M2/7‑50 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcct > 1:2756911‑M2/6‑50 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcct < 1:68291‑M2/45‑1 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg < 1:110485‑M2/46‑1 (MQ=255) gTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctc > 1:4881033‑M2/2‑50 (MQ=255) gTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctc > 1:4464738‑M2/2‑50 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctct < 1:2415474/50‑1 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctct < 1:4697201/50‑1 (MQ=255) | GCATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCT > NC_000913/1140939‑1141037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |