| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 105 [0] | [0] 111 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 73 (1.340) +CAGATAATTCAA |
44/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 132 total aligned reads displayed.
TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |||||||||||| TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATC < 1:1706323/50‑1 AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCA < 1:1432096/49‑1 AGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA > 1:2248875/1‑49 AGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA > 1:3705932/1‑49 GTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATA < 1:5426232/50‑1 CTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAAT > 1:179850/1‑50 TCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:4402631/1‑50 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:2974358/1‑49 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:2486845/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA < 1:2192199/50‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC > 1:2957574/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC < 1:5484088/49‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC > 1:4365914/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT < 1:4503229/48‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAAT < 1:4206067/47‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:3762358/1‑48 TCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAG > 1:3757603/1‑50 TCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAG > 1:3647022/1‑50 CCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGC > 1:3200595/1‑50 GATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG > 1:3240848/1‑50 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGG < 1:4260684/50‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG < 1:4622988/49‑1 TTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGC > 1:5260130/1‑50 TTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT > 1:2838601/1‑50 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT < 1:3012235/49‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT < 1:3094015/49‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT > 1:2361765/1‑49 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA < 1:1093258/50‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA < 1:4666815/50‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT < 1:1707174/50‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:1811867/1‑50 AATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:3972403/1‑49 AATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:5527462/1‑49 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:3722042/1‑50 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:4133737/49‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:2180413/49‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:1242018/49‑1 TCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:3950825/1‑49 CTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:2015812/1‑49 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:2881831/48‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:4084265/48‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATA < 1:895918/47‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT > 1:708504/1‑50 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGA < 1:3978408/48‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATT < 1:403146/50‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT < 1:2218043/49‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT < 1:867396/49‑1 GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT > 1:1480903/1‑50 GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT > 1:3530034/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG < 1:2032222/50‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG < 1:1095412/50‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG > 1:2930278/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG < 1:4770832/50‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:4534059/49‑1 AAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT > 1:1328043/1‑50 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT > 1:1495650/1‑50 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT < 1:2225199/49‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT < 1:4562900/49‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT < 1:752699/48‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT < 1:3014007/48‑1 GAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTT < 1:3852231/50‑1 GAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTT > 1:579176/1‑50 GAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTT > 1:603809/1‑50 GAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTT < 1:3278901/50‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:4803386/1‑50 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:5052077/1‑49 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:89359/1‑49 TATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC > 1:195896/1‑50 ATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACG > 1:5357262/1‑50 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT < 1:1346167/50‑1 CAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT > 1:4228045/1‑49 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGA < 1:515929/50‑1 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGA < 1:5079610/50‑1 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG > 1:1918156/1‑49 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG < 1:5384153/49‑1 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG < 1:4494078/49‑1 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG > 1:1593090/1‑49 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG > 1:4376005/1‑49 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG > 1:3683366/1‑49 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA > 1:4810858/1‑50 TAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATG < 1:4228564/50‑1 TAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATG < 1:4052426/50‑1 AATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:5030128/1‑48 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGA < 1:5241599/49‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGA < 1:3827293/49‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:1669047/1‑47 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:3007154/1‑47 TTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGA < 1:1768093/50‑1 TTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGA < 1:3327399/50‑1 TTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGA > 1:3465797/1‑48 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:1094223/1‑49 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:4859768/1‑49 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA < 1:2297911/50‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA < 1:2156616/50‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA < 1:90975/50‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:5584785/49‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:4110982/49‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:283964/49‑1 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > 1:5345498/1‑50 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > 1:3282854/1‑50 |||||||||||| TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |