| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 105 [0] | [0] 111 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 73 (1.340) +CAGATAATTCAA |
44/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 111 total aligned reads displayed.
ATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223045‑1223142 | tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 1:4103568‑M2/49‑50 (MQ=255)tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 1:3757603‑M2/49‑50 (MQ=255)tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 1:3647022‑M2/49‑50 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAg < 1:3892101‑M2/2‑1 (MQ=255) tgattttagtaatctcttgatgctaagaactatcagataattcaaAGCGt > 1:2185745‑M2/46‑50 (MQ=255) gattttagtaatctcttgatgctaagaactatcagataattcaaAGCGTg > 1:3240848‑M2/45‑50 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTgg < 1:4260684‑M2/7‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTg < 1:4622988‑M2/6‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTg < 1:3665888‑M2/6‑1 (MQ=255) ttttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGc > 1:5260130‑M2/43‑50 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt < 1:3094015‑M2/11‑1 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt < 1:3012235‑M2/11‑1 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt > 1:2361765‑M2/39‑49 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtga < 1:1093258‑M2/13‑1 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtga < 1:4666815‑M2/13‑1 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat < 1:1841853‑M2/14‑1 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat > 1:1811867‑M2/37‑50 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat < 1:1707174‑M2/14‑1 (MQ=255) aatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat > 1:3972403‑M2/36‑49 (MQ=255) aatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat > 1:5527462‑M2/36‑49 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatg < 1:4133737‑M2/15‑1 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatg < 1:2180413‑M2/15‑1 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatg < 1:1242018‑M2/15‑1 (MQ=255) tctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:3950825‑M2/34‑49 (MQ=255) cttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:2015812‑M2/31‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTgatgat < 1:17312‑M2/17‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATa < 1:895918‑M2/18‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg < 1:4950221‑M2/19‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg < 1:4084265‑M2/19‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg < 1:2881831‑M2/19‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGa < 1:3978408‑M2/21‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGa < 1:4218722‑M2/21‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 1:606268‑M2/28‑50 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 1:708504‑M2/28‑50 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAtt < 1:4559873‑M2/24‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt < 1:2218043‑M2/23‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt < 1:867396‑M2/23‑1 (MQ=255) gctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt > 1:1480903‑M2/25‑50 (MQ=255) gctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt > 1:3530034‑M2/25‑50 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt < 1:4534059‑M2/26‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg < 1:2032222‑M2/27‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg > 1:2930278‑M2/24‑50 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg < 1:1095412‑M2/27‑1 (MQ=255) aagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt > 1:1328043‑M2/22‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttt > 1:1495650‑M2/21‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt < 1:4562900‑M2/29‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt < 1:2225199‑M2/29‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt < 1:2894614‑M2/29‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt < 1:4433297‑M2/28‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt < 1:752699‑M2/28‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt < 1:3014007‑M2/28‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt < 1:3731010‑M2/28‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 1:3278901‑M2/31‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt > 1:579176‑M2/20‑50 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt > 1:603809‑M2/20‑50 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 1:3852231‑M2/31‑1 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:4803386‑M2/19‑50 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:5052077‑M2/18‑49 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:89359‑M2/18‑49 (MQ=255) tatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc > 1:195896‑M2/16‑50 (MQ=255) atcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg > 1:5357262‑M2/15‑50 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:397982‑M2/14‑50 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt < 1:1346167‑M2/37‑1 (MQ=255) cagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt > 1:4228045‑M2/13‑49 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg > 1:1918156‑M2/12‑49 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 1:5384153‑M2/38‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg > 1:4376005‑M2/12‑49 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 1:4494078‑M2/38‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg > 1:3683366‑M2/12‑49 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg > 1:1593090‑M2/12‑49 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGa < 1:515929‑M2/39‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGa < 1:5079610‑M2/39‑1 (MQ=255) gataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGaa > 1:4810858‑M2/11‑50 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 1:1298017‑M2/41‑1 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 1:4723679‑M2/41‑1 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATg < 1:5407037‑M2/42‑1 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATg < 1:5534967‑M2/42‑1 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATg < 1:4052426‑M2/42‑1 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATg < 1:4228564‑M2/42‑1 (MQ=255) aattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:5030128‑M2/8‑48 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:1669047‑M2/7‑47 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:3007154‑M2/7‑47 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 1:3827293‑M2/43‑1 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 1:5241599‑M2/43‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgaga < 1:3327399‑M2/45‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgaga < 1:1768093‑M2/45‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga > 1:3465797‑M2/6‑48 (MQ=255) tcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 1:3026380‑M2/5‑50 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 1:1094223‑M2/4‑49 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 1:4859768‑M2/4‑49 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaata < 1:2297911‑M2/48‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaata < 1:2248622‑M2/48‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaata < 1:2156616‑M2/48‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaata < 1:90975‑M2/48‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaat < 1:4110982‑M2/47‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaat < 1:283964‑M2/47‑1 (MQ=255) aAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataa > 1:5345498‑M2/2‑50 (MQ=255) aAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataa > 1:3282854‑M2/2‑50 (MQ=255) aGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataat < 1:5043921/50‑1 (MQ=255) aGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataat < 1:4876726/50‑1 (MQ=255) | ATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223045‑1223142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |