| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 82 [0] | [0] 84 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 82 (1.150) | 52/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627469‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT > NC_000913/1652762‑1652808 CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA < 1:1928721/50‑1CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA < 1:2788943/50‑1CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA < 1:3416940/50‑1CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA < 1:499768/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:4454796/1‑50 ATCCCGTGCTATGATATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:3461304/1‑50 CCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:4894034/1‑50 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGC < 1:3944421/50‑1 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:5113043/1‑49 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCA < 1:1608601/50‑1 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCA < 1:2638183/50‑1 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:5348316/1‑48 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:3815587/1‑48 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG < 1:2138581/50‑1 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG < 1:4428474/50‑1 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:3544948/1‑50 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:3544986/1‑50 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT > 1:429492/1‑50 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT < 1:4508854/50‑1 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT < 1:4503789/50‑1 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT > 1:3773712/1‑50 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT > 1:1403485/1‑50 GCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG > 1:2789767/1‑50 GCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG > 1:4588555/1‑50 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC > 1:3688897/1‑50 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC > 1:491528/1‑50 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC > 1:3992021/1‑50 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:2252138/1‑50 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:4311610/1‑50 ATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:4399913/1‑49 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC < 1:3525871/48‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC < 1:5054689/48‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:3904909/1‑48 GTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAG > 1:5233245/1‑50 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:2641197/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:4229257/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:3540640/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:1343275/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCC < 1:4897318/49‑1 TGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC > 1:1710250/1‑50 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC < 1:4068258/49‑1 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC < 1:678845/49‑1 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC > 1:3350299/1‑50 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC < 1:2128043/49‑1 CACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCG < 1:4227555/50‑1 CACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCG < 1:867366/50‑1 ACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA > 1:5217502/1‑50 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA < 1:2668697/50‑1 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA > 1:539821/1‑50 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT < 1:3421963/50‑1 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT > 1:103527/1‑50 AAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGC > 1:1425658/1‑50 AAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGC < 1:5088773/50‑1 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT < 1:4875016/50‑1 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT < 1:1223026/50‑1 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT < 1:624705/50‑1 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT < 1:645544/50‑1 GCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTG < 1:770332/50‑1 CGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC > 1:3036089/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:3836476/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:3234563/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:4276245/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:3698180/1‑50 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT < 1:40049/50‑1 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:2543422/1‑50 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT < 1:5380777/49‑1 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:2727011/1‑49 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCA < 1:3085289/50‑1 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC < 1:4794554/50‑1 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC > 1:27404/1‑50 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC > 1:3721396/1‑50 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAA < 1:1027613/50‑1 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCA > 1:1987505/1‑49 CAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAA < 1:127587/50‑1 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT > 1:2900331/1‑50 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT > 1:1207761/1‑50 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT < 1:3397650/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 1:4528209/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 1:5397294/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 1:439674/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT < 1:3088544/49‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT > 1:3146600/1‑48 CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627469‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT > NC_000913/1652762‑1652808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |