| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 82 [0] | [0] 84 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 82 (1.150) | 52/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATT > NC_000913/1627469‑1627564 | cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa < 1:1928721‑M1/50‑2 (MQ=255)cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa < 1:2788943‑M1/50‑2 (MQ=255)cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa < 1:3416940‑M1/50‑2 (MQ=255)cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa < 1:499768‑M1/50‑2 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:4454796‑M1/1‑48 (MQ=255) aTCCCGTGCTATGATATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:3461304‑M1/1‑48 (MQ=255) cccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:4894034‑M1/1‑46 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgc < 1:3944421‑M1/50‑6 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:5113043‑M1/1‑45 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgca < 1:1608601‑M1/50‑7 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgca < 1:2638183‑M1/50‑7 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:5348316‑M1/1‑44 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:3815587‑M1/1‑44 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag < 1:2138581‑M1/50‑8 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag < 1:4428474‑M1/50‑8 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:3544948‑M1/1‑43 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:3544986‑M1/1‑43 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt > 1:429492‑M1/1‑42 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt < 1:4508854‑M1/50‑9 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt < 1:4503789‑M1/50‑9 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt > 1:3773712‑M1/1‑42 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt > 1:1403485‑M1/1‑42 (MQ=255) gCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtg > 1:2789767‑M1/1‑41 (MQ=255) gCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtg > 1:4588555‑M1/1‑41 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:3688897‑M1/1‑40 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:491528‑M1/1‑40 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:3992021‑M1/1‑40 (MQ=255) tATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:2252138‑M1/1‑39 (MQ=255) tATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:4311610‑M1/1‑39 (MQ=255) aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:4399913‑M1/1‑38 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc < 1:3525871‑M1/48‑12 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc < 1:5054689‑M1/48‑12 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:3904909‑M1/1‑37 (MQ=255) gTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag > 1:5233245‑M1/1‑36 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:2641197‑M1/1‑35 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca > 1:4229257‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca > 1:3540640‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca > 1:1343275‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcc < 1:4897318‑M1/49‑17 (MQ=255) tGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatc > 1:1710250‑M1/1‑31 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatc < 1:4068258‑M1/49‑20 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatc < 1:678845‑M1/49‑20 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:3350299‑M1/1‑29 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcc < 1:2128043‑M1/49‑21 (MQ=255) cacacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccg < 1:4227555‑M1/50‑23 (MQ=255) cacacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccg < 1:867366‑M1/50‑23 (MQ=255) acacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccga > 1:5217502‑M1/1‑27 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata < 1:2668697‑M1/50‑26 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata > 1:539821‑M1/1‑25 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact < 1:3421963‑M1/50‑28 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact > 1:103527‑M1/1‑23 (MQ=255) aaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgc > 1:1425658‑M1/1‑21 (MQ=255) aaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgc < 1:5088773‑M1/50‑30 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:4875016‑M1/50‑31 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:1223026‑M1/50‑31 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:624705‑M1/50‑31 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:645544‑M1/50‑31 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg < 1:770332‑M1/50‑32 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc > 1:3036089‑M1/1‑18 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:3836476‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:3234563‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:4276245‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:3698180‑M1/1‑17 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctt < 1:40049‑M1/50‑35 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:2543422‑M1/1‑15 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt < 1:5380777‑M1/49‑36 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:2727011‑M1/1‑14 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttca < 1:3085289‑M1/50‑38 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac < 1:4794554‑M1/50‑39 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac > 1:27404‑M1/1‑12 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac > 1:3721396‑M1/1‑12 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaa < 1:1027613‑M1/50‑42 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca > 1:1987505‑M1/1‑9 (MQ=255) cAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaa < 1:127587‑M1/50‑43 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 1:2900331‑M1/1‑7 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 1:1207761‑M1/1‑7 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat < 1:3397650‑M1/50‑44 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctt < 1:4528209‑M1/50‑48 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctt < 1:5397294‑M1/50‑48 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctt < 1:439674‑M1/50‑48 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct < 1:3088544‑M1/49‑47 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:3146600‑M1/1‑2 (MQ=255) | CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATT > NC_000913/1627469‑1627564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |