| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 82 [0] | [0] 84 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 82 (1.150) | 52/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
ATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGT > NC_000913/1652713‑1652811 | catcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaa < 1:3416940‑M2/1‑1 (MQ=255)catcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaa < 1:2788943‑M2/1‑1 (MQ=255)catcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaa < 1:499768‑M2/1‑1 (MQ=255)catcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaa < 1:1928721‑M2/1‑1 (MQ=255) atcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAg > 1:4454796‑M2/49‑50 (MQ=255) atcccgtgctatgatattgacacacaaaagcgttgaggaacagtgagaAg > 1:3461304‑M2/49‑50 (MQ=255) cccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:4894034‑M2/47‑50 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcgc < 1:3944421‑M2/5‑1 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:5113043‑M2/46‑49 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:5348316‑M2/45‑48 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:3815587‑M2/45‑48 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCa < 1:1608601‑M2/6‑1 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCa < 1:2638183‑M2/6‑1 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg > 1:3544948‑M2/44‑50 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg < 1:4428474‑M2/7‑1 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg < 1:2138581‑M2/7‑1 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg > 1:3544986‑M2/44‑50 (MQ=255) tgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGt > 1:429492‑M2/43‑50 (MQ=255) tgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGt > 1:3773712‑M2/43‑50 (MQ=255) tgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGt < 1:4508854‑M2/8‑1 (MQ=255) tgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGt > 1:1403485‑M2/43‑50 (MQ=255) tgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGt < 1:4503789‑M2/8‑1 (MQ=255) gctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTg > 1:4588555‑M2/42‑50 (MQ=255) gctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTg > 1:2789767‑M2/42‑50 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGc > 1:3688897‑M2/41‑50 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGc > 1:491528‑M2/41‑50 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGc > 1:3992021‑M2/41‑50 (MQ=255) tatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:4311610‑M2/40‑50 (MQ=255) tatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:2252138‑M2/40‑50 (MQ=255) atgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:4399913‑M2/39‑49 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc < 1:3525871‑M2/11‑1 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:3904909‑M2/38‑48 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc < 1:5054689‑M2/11‑1 (MQ=255) gttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAg > 1:5233245‑M2/37‑50 (MQ=255) ttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGc > 1:2641197‑M2/36‑50 (MQ=255) attgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGcc < 1:4897318‑M2/16‑1 (MQ=255) attgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCa > 1:4229257‑M2/34‑50 (MQ=255) attgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCa > 1:3540640‑M2/34‑50 (MQ=255) attgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCa > 1:1343275‑M2/34‑50 (MQ=255) tgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATc > 1:1710250‑M2/32‑50 (MQ=255) gacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATc < 1:4068258‑M2/19‑1 (MQ=255) gacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATc < 1:678845‑M2/19‑1 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc > 1:3350299‑M2/30‑50 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATcc < 1:2128043‑M2/20‑1 (MQ=255) cacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCg < 1:4227555‑M2/22‑1 (MQ=255) cacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCg < 1:867366‑M2/22‑1 (MQ=255) acacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGa > 1:5217502‑M2/28‑50 (MQ=255) acaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATa < 1:2668697‑M2/25‑1 (MQ=255) acaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATa > 1:539821‑M2/26‑50 (MQ=255) aaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATAct < 1:3421963‑M2/27‑1 (MQ=255) aaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATAct > 1:103527‑M2/24‑50 (MQ=255) aagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgc > 1:1425658‑M2/22‑50 (MQ=255) aagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgc < 1:5088773‑M2/29‑1 (MQ=255) agcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgct < 1:4875016‑M2/30‑1 (MQ=255) agcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgct < 1:645544‑M2/30‑1 (MQ=255) agcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgct < 1:624705‑M2/30‑1 (MQ=255) agcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgct < 1:1223026‑M2/30‑1 (MQ=255) gcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgctg < 1:770332‑M2/31‑1 (MQ=255) cgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACtgctgc > 1:3036089‑M2/19‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:3836476‑M2/18‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:3234563‑M2/18‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:4276245‑M2/18‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:3698180‑M2/18‑50 (MQ=255) ttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCtt < 1:40049‑M2/34‑1 (MQ=255) tgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt > 1:2543422‑M2/16‑50 (MQ=255) gaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt < 1:5380777‑M2/35‑1 (MQ=255) gaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt > 1:2727011‑M2/15‑49 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCa < 1:3085289‑M2/37‑1 (MQ=255) ggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAc > 1:3721396‑M2/13‑50 (MQ=255) ggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAc < 1:4794554‑M2/38‑1 (MQ=255) ggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAc > 1:27404‑M2/13‑50 (MQ=255) acagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCaa < 1:1027613‑M2/41‑1 (MQ=255) acagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCa > 1:1987505‑M2/10‑49 (MQ=255) cagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCaaa < 1:127587‑M2/42‑1 (MQ=255) agtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAt > 1:1207761‑M2/8‑50 (MQ=255) agtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAt > 1:2900331‑M2/8‑50 (MQ=255) agtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAt < 1:3397650‑M2/43‑1 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCtt < 1:4528209‑M2/47‑1 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCtt < 1:5397294‑M2/47‑1 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCtt < 1:439674‑M2/47‑1 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCt < 1:3088544‑M2/46‑1 (MQ=255) gaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCt > 1:3146600‑M2/3‑48 (MQ=255) aGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGt > 1:2327344/1‑50 (MQ=255) aGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGt > 1:831702/1‑50 (MQ=255) | ATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGT > NC_000913/1652713‑1652811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |