| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 58 [1] | [0] 55 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 1 (0.010) | 54 (0.740) | 42/98 | 0.1 | 99.1% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > NC_000913/2023679‑2023726 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGT > 1:1249116/1‑50 GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCC < 1:4496105/49‑1 AGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTA < 1:4005632/50‑1 AGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTA < 1:4868304/50‑1 GCAGAAACTTCTCGAGGAACTGGCGGGTGGGAGGCTGCTCGGTTCCGTAA < 1:232391/50‑1 GCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAA < 1:2906211/50‑1 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAAC < 1:3595952/50‑1 AGAAACTTCTCGAGGAACTGGCGGGTGCGCGGCTGCTCGGGTCCGTGACG > 1:722178/1‑50 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGGTGCTCGGTTCCGTAACG > 1:1557972/1‑50 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACG < 1:1357350/50‑1 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGTAAag > 1:3998804/1‑48 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCCGTTCCGTAACG > 1:1187171/1‑50 GAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCCTAACGT > 1:4178455/1‑50 AAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGTAACGTT > 1:3873636/1‑50 AAACTTCTCGAGGAACTGGCGGGGGCGAGGCGGCTCGGGTCCGTAAAGTT > 1:410421/1‑50 AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTT < 1:2679507/50‑1 CTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTAT < 1:5115461/50‑1 CTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCA < 1:3328250/49‑1 CGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGT > 1:23126/1‑50 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGT > 1:2949172/1‑49 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATG < 1:5521473/48‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATG < 1:4422267/48‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATG < 1:5339828/48‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCAT < 1:1484753/47‑1 GGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTAT < 1:5142854/50‑1 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC > 1:2512364/1‑50 CTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTA < 1:2813595/50‑1 CTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:2133347/1‑49 TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:4071887/1‑48 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGG < 1:4247962/50‑1 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAG < 1:3940138/49‑1 CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA < 1:4475866/50‑1 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT > 1:1087888/1‑50 GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT < 1:2779504/50‑1 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA < 1:3199117/50‑1 TGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTAT < 1:2474042/50‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC < 1:1076298/50‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATC < 1:4037348/49‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG < 1:4915654/50‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:1505759/1‑49 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:4745156/1‑49 AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGA < 1:2753517/50‑1 AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGA < 1:197094/50‑1 AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG > 1:2801963/1‑49 GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA < 1:3005669/50‑1 GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAA > 1:1938313/1‑49 TGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > 1:3209030/1‑50 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATA < 1:4739306/50‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT < 1:1388619/49‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT < 1:594915/49‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA < 1:5365141/48‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA < 1:1158961/50‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA < 1:2102798/48‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA < 1:2695876/48‑1 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > NC_000913/2023679‑2023726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |