| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 58 [1] | [0] 55 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 1 (0.010) | 54 (0.740) | 42/98 | 0.1 | 99.1% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCT > NC_000913/1997062‑1997159 | ttattGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTTGTCgg > 1:2019564/1‑50 (MQ=255)ttattGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCgg > 1:581546/1‑50 (MQ=255) tattGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCggg > 1:4863904/1‑50 (MQ=255) tattGCAGCAGAAACTTCTCGAGGAACTGGCGGGCGCCGGGCGGCTCggc > 1:955581/1‑49 (MQ=255) tATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGt > 1:1249116‑M1/1‑49 (MQ=255) gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc < 1:4496105‑M1/49‑5 (MQ=255) agcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgta < 1:4868304‑M1/50‑8 (MQ=255) agcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgta < 1:4005632‑M1/50‑8 (MQ=255) gcagAAACTTCTCGAGGAACTGGCGGGTGGGAGGCTGCTCGGttccgtaa < 1:232391‑M1/50‑9 (MQ=255) gcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaa < 1:2906211‑M1/50‑9 (MQ=255) cagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaac < 1:3595952‑M1/50‑10 (MQ=255) agAAACTTCTCGAGGAACTGGCGGGTGCGCGGCTGCTCGGgtccgtgacg > 1:722178‑M1/1‑40 (MQ=255) agAAACTTCTCGAGGAACTGGCGGGTGCGAGGGTGCTCGGttccgtaacg > 1:1557972‑M1/1‑40 (MQ=255) agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacg < 1:1357350‑M1/50‑11 (MQ=255) agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgtaaag > 1:3998804‑M1/1‑40 (MQ=255) agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCCGttccgtaacg > 1:1187171‑M1/1‑40 (MQ=255) gAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccctaacgt > 1:4178455‑M1/1‑39 (MQ=255) aaaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGgtccgtaacgtt > 1:3873636‑M1/1‑38 (MQ=255) aaaCTTCTCGAGGAACTGGCGGGGGCGAGGCGGCTCGGgtccgtaaagtt > 1:410421‑M1/1‑38 (MQ=255) aaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgttt < 1:2679507‑M1/50‑14 (MQ=255) cTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttat < 1:5115461‑M1/50‑16 (MQ=255) ctcGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatca < 1:3328250‑M1/49‑18 (MQ=255) cGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgt > 1:23126‑M1/1‑30 (MQ=255) gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgt > 1:2949172‑M1/1‑29 (MQ=255) gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatg < 1:4422267‑M1/48‑20 (MQ=255) gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatg < 1:5339828‑M1/48‑20 (MQ=255) gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatg < 1:5521473‑M1/48‑20 (MQ=255) gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcat < 1:1484753‑M1/47‑19 (MQ=255) ggAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttat < 1:5142854‑M1/50‑24 (MQ=255) aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcc > 1:2512364‑M1/1‑25 (MQ=255) cTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatccta < 1:2813595‑M1/50‑28 (MQ=255) cTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcct > 1:2133347‑M1/1‑23 (MQ=255) tGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcct > 1:4071887‑M1/1‑22 (MQ=255) gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaagg < 1:4247962‑M1/50‑31 (MQ=255) gCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaag < 1:3940138‑M1/49‑30 (MQ=255) cGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaagga < 1:4475866‑M1/50‑32 (MQ=255) gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat > 1:1087888‑M1/1‑18 (MQ=255) gggTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggat < 1:2779504‑M1/50‑33 (MQ=255) gTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggatta < 1:3199117‑M1/50‑35 (MQ=255) tGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattat < 1:2474042‑M1/50‑36 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc < 1:1076298‑M1/50‑38 (MQ=255) cGAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatc < 1:4037348‑M1/49‑37 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccg < 1:4915654‑M1/50‑39 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 1:4745156‑M1/1‑12 (MQ=255) gAGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatcc > 1:1505759‑M1/1‑12 (MQ=255) aGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccga < 1:2753517‑M1/50‑40 (MQ=255) aGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccga < 1:197094‑M1/50‑40 (MQ=255) aGGCTGCTCGGttccgtaacgtttatcatgttatcctaaggattatccg > 1:2801963‑M1/1‑11 (MQ=255) gctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaa < 1:3005669‑M1/50‑42 (MQ=255) gctgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaa > 1:1938313‑M1/1‑9 (MQ=255) tgctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaa > 1:3209030‑M1/1‑7 (MQ=255) ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaata < 1:4739306‑M1/50‑46 (MQ=255) ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaat < 1:1388619‑M1/49‑45 (MQ=255) ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaat < 1:594915‑M1/49‑45 (MQ=255) ctCGGttccgtaacgtttatcatgttatcctaaggattatccgaaaaa < 1:5365141‑M1/48‑44 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataata < 1:1158961‑M1/50‑49 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa < 1:2102798‑M1/48‑47 (MQ=255) ggttccgtaacgtttatcatgttatcctaaggattatccgaaaaataa < 1:2695876‑M1/48‑47 (MQ=255) | TTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCCCCTGCTCGACTATCCGCCCCT > NC_000913/1997062‑1997159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |