| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 31 (0.430) | 23 (0.340) | 21/92 | 1.2 | 40.7% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 38 (0.560) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA > NC_000913/2867269‑2867317 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:5349200/1‑50 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:2681685/1‑49 ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:4390599/1‑50 ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:3548705/1‑50 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 1:2164690/1‑49 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:1240201/1‑48 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT < 1:3844335/50‑1 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT > 1:4209574/1‑50 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC > 1:4148015/1‑50 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC > 1:3216006/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG < 1:1128710/50‑1 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC < 1:2224265/50‑1 GACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG > 1:167760/1‑50 CCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:4082540/1‑50 CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG > 1:3873008/1‑50 TGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 1:1742197/1‑49 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:1740016/1‑50 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:1261417/1‑50 TTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCT > 1:211586/1‑50 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:3204020/1‑49 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:4064180/1‑50 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:3743780/1‑49 TACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG > 1:3204152/1‑50 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC < 1:675099/50‑1 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC > 1:4982883/1‑50 AACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC < 1:1008855/50‑1 GCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACG > 1:1587528/1‑50 ACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG < 1:49869/50‑1 CGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC > 1:2415825/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA < 1:497930/50‑1 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA < 1:43522/50‑1 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > 1:2355170/1‑49 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > 1:1096114/1‑49 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA > NC_000913/2867269‑2867317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |